| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1169379 | 26 (1.030) | 4 (0.170) | 4/234 | 2.4 | 13.9% | intergenic (+49/+33) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913 | = 1169384 | 26 (1.130) | intergenic (+54/+28) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1169301‑1169379‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccgcgacaCGGCATGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAGGGTTAATGCTTATTTATAAATTACTGCTGTTCCATGGAGGGTATTC < NC_000913/1169384‑1169294 CTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAG > 7:29715/1‑124CTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAG < 8:29715/124‑1 TGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTC > 1:19477/1‑65 TGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTC < 2:19477/65‑1 ATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAGGGTTAATGCTTATTTATAAATTACTGCTGTTCCATGGAGGGTATTC < 7:36829/124‑1 ATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAGGGTTAATGCTTATTTATAAATTACTGCTGTTCCATGGAGGGTATTC > 8:36829/1‑124 CTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1169301‑1169379‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccgcgacaCGGCATGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAGGGTTAATGCTTATTTATAAATTACTGCTGTTCCATGGAGGGTATTC < NC_000913/1169384‑1169294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |