New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2801047 =	23 (0.910)	3 (0.130)	3/238	2.8	12.9%	coding (83/411 nt)	nrdI	NrdEF cluster assembly flavodoxin
	?	NC_000913	2801066 =	19 (0.810)					coding (102/411 nt)	nrdI	NrdEF cluster assembly flavodoxin
Rejected: Frequency below/above cutoff threshold.

CTGGTCTGGTTTCCGTCCGGACATGATTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCG  >  NC_000913/2800902‑2801193                                                                                                                                                  |                                                                                                                                                   accagaagcaataacgccgcgaagcaacgcccggttgtgctcgtcgtttaaaaagcgaattacctgtcgtggcaccgcgccagccgtaccgccgccgccgtaagagggcacgatcaggatgtaaggctcgtctacctgaatccgtTcc                                                                                                                                                  >  6:30225‑M1/146‑148 (MQ=255)  ccagaagcaataacgccgcgaagcaacgcccggttgtgctcgtcgtttaaaaagcgaattacctgtcgtggcaccgcgccagccgtaccgccgccgccgtaagagggcacgatcaggatgtaaggctcgtctacctgaatccgtTccc                                                                                                                                                 >  2:68212‑M1/145‑148 (MQ=255)        ggtTTCCGTCCGGACATGATTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAAt                                                                                                                                          >  5:70063/1‑149 (MQ=255)               gtccgGACATGATTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCggg                                                                                                                                   <  1:46425/149‑1 (MQ=255)                               ccGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGa                                                                                                                   >  1:84718/1‑149 (MQ=255)                                    tGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGc                                                                                                              >  1:12599/1‑149 (MQ=255)                                      cATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGc                                                                                                              <  2:84718/147‑1 (MQ=255)                                      cATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCt                                                                                                            >  5:109793/1‑149 (MQ=255)                                       aTCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCtt                                                                                                           <  1:8416/149‑1 (MQ=255)                                           aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAgg                                                                                                                       <  1:64077/133‑1 (MQ=255)                                           aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAgg                                                                                                                       >  2:64077/1‑133 (MQ=255)                                                                       ggcaccgcgccagccgtaccgccgccgccgtaagagggcacgatcaggatgtaaggctcgtctacctgaatccgtTCCCGCTCATTGAGCGGGAACGGATTCAGGTAGACGAGCCTTa                                                                                                          <  1:7474‑M1/43‑1 (MQ=255)                                                                       ggcaccgcgccagccgtaccgccgccgccgtaagagggcacgatcaggatgtaaggctcgtctacctgaatccgtTCCCGCTCATTGAGCGGGAACGGATTCAGGTAGACGAGCCTTa                                                                                                          >  2:7474‑M1/76‑118 (MQ=255)                                                                       aGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATcc                                                                                                                                                  >  8:67555/1‑78 (MQ=255)                                                                       aGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATcc                                                                                                                                                  <  7:67555/78‑1 (MQ=255)                                                                        gCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAgg                                                                                                                       >  2:83587/1‑104 (MQ=255)                                                                          tCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAcggcggcggcgg                                                                         >  5:80790/1‑148 (MQ=255)                                                                                 cTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTg                                                                 <  6:109793/149‑1 (MQ=255)                                                                                  ttCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAcggcg                                                                                <  5:89094/133‑1 (MQ=255)                                                                                  ttCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAcggcg                                                                                >  6:89094/1‑133 (MQ=255)                                                                                              tCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACg                                                    >  2:25223/1‑149 (MQ=255)                                                                                                   aaaCACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAgg                                               <  2:12599/149‑1 (MQ=255)                                                                                                                      gAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGAt                                                                                                 <  7:20295/80‑1 (MQ=255)                                                                                                                      gAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGAt                                                                                                 >  8:20295/1‑80 (MQ=255)                                                                                                                                      ccGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCttt                                    >  2:47977/1‑125 (MQ=255)                                                                                                                                      ccGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCttt                                    <  1:47977/125‑1 (MQ=255)                                                                                                                                             gcgcATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTCTTTAAACGACGAGCACAACCGGGCGTTGCTTc     <  6:80790/149‑1 (MQ=255)                                                                                                                                                gtTCCCGCTCATTGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTcgcg  <  3:99496‑M1/147‑1 (MQ=255)                                                                                                                                                  TCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAAc                  >  2:45951‑M1/1‑131 (MQ=255)                                                                                                                                                  TCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAAc                  <  1:45951‑M1/131‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CTGGTCTGGTTTCCGTCCGGACATGATTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCG  >  NC_000913/2800902‑2801193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.