New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1954549 =	14 (0.550)	4 (0.170)	4/240	2.4	23.4%	intergenic (+136/+29)	cmoB/torZ	tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit
	?	NC_000913	1954569 =	13 (0.550)					intergenic (+156/+9)	cmoB/torZ	tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit

GGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAAC  >  NC_000913/1954456‑1954710                                                                                                                  |                                                                                                                                              ggCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCaaa                                                                                                            >  8:37477/1‑149 (MQ=255)    tcagcgttggtgtatatcgaaaaatatacgggcaatgcaccgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatagcgcccgtttccgggcgctATTCACGTCTTa                                                                                                                                    <  6:36148‑M2/12‑1 (MQ=255)    tcagcgttggtgtatatcgaaaaatatacgggcaatgcaccgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatagcgcccgtttccgggcgctATTCACGTCTTa                                                                                                                                    >  5:36148‑M2/111‑122 (MQ=255)          aaCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTaa                                                                                                   <  7:37477/149‑1 (MQ=255)             cTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACtt                                                                                                >  1:32162/1‑149 (MQ=255)                                          accgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatagcgcccgtttccgggcgctATTc                                                                                                                                            >  1:8627‑M2/73‑76 (MQ=255)                                          accgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatagcgcccgtttccgggcgctATTc                                                                                                                                            <  2:8627‑M2/4‑1 (MQ=255)                                           gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGAtata                                                                  >  6:115569/1‑149 (MQ=255)                                               gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGa                                                                                                                             <  2:109868/86‑1 (MQ=255)                                               gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGATTCCGGGCGCTATTCACGTCTTACGCCTGa                                                                                                                             >  1:109868/1‑86 (MQ=255)                                                       aGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      <  7:65282/149‑1 (MQ=255)                                                           tAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTa                                                  >  1:22970/1‑149 (MQ=255)                                                                      gCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAgg                                        >  3:33129/1‑148 (MQ=255)                                                                          cTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCAttt                                   <  4:33129/149‑1 (MQ=255)                                                                           tttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTg                                  >  1:42953/1‑149 (MQ=255)                                                                            ttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      >  5:108223/1‑128 (MQ=255)                                                                            ttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      <  6:108223/128‑1 (MQ=255)                                                                                  taagacgtgaatAGCGCCCGGAAACGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      >  5:36148‑M1/13‑122 (MQ=255)                                                                                  taagacgtgaatAGCGCCCGGAAACGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      <  6:36148‑M1/110‑1 (MQ=255)                                                                                          gaatAGCGCCCGGAAACGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGt                                                                                            <  2:8627‑M1/72‑1 (MQ=255)                                                                                          gaatAGCGCCCGGAAACGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGt                                                                                            >  1:8627‑M1/5‑76 (MQ=255)                                                                                              AGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTgggg                 >  5:115569‑M1/1‑147 (MQ=255)                                                                                                           gggcgctATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAac  <  2:32162‑M2/142‑1 (MQ=255)                                                                                                                  |                                                                                                                                              GGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAAC  >  NC_000913/1954456‑1954710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.