Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,354,100 | T→A | 6.1% | V206V (GTA→GTT) | lysU ← | lysine tRNA synthetase, inducible |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,354,100 | 0 | T | A | 6.1% | 209.1 / 3.7 | 65 | V206V (GTA→GTT) | lysU | lysine tRNA synthetase, inducible |
Reads supporting (aligned to +/- strand): ref base T (34/27); new base A (2/2); total (36/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 |
TACCCGTTCAAAACCGCCTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTG > NC_000913/4353953‑4354237 | tACCCGTTCAAAACCGCCTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCt < 7:163147/148‑1 (MQ=255) cccGTTCAAAACCGCCTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTa < 1:304174/147‑1 (MQ=255) ttCAAAACCGCCTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCACCTTc > 3:276874/1‑147 (MQ=255) ttCAAAACCGCCTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATATAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCAACTTc > 3:281331/1‑147 (MQ=255) ttCAAAACCGCCTACAACCAGACGGTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCAGGAATTACCTGCATCATCGGGGTTTCTACTTc > 7:101253/1‑147 (MQ=255) aaCCGCCTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATa > 4:302135/1‑146 (MQ=255) cTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAACGCcgcg > 5:48226/1‑148 (MQ=255) ccAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGAc > 2:244294/1‑148 (MQ=255) cAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGAc > 3:153455/1‑147 (MQ=255) gACCTTTCAGATACAGCTCCGGCGCGATACGCAGATACAAATCTAAATCCAGAGAATTATGATGGGTAATAAACTGGAGAGAAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTACTACTTCCATAAAGCCGCGCGCGACCAt > 2:167214/1‑148 (MQ=255) cGTTTCAGATACAGCTACGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGa < 5:21632/148‑1 (MQ=255) gTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGaa < 1:134001/148‑1 (MQ=255) ttCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAAtt > 3:47752/1‑148 (MQ=255) tCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAAtt < 8:101253/147‑1 (MQ=255) gATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGAc > 6:243042/1‑147 (MQ=255) gATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGAc < 5:243042/147‑1 (MQ=255) aTACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACg > 5:182448/1‑147 (MQ=255) aTACAGCTCCGGCGCGATACCCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACg > 6:302034/1‑147 (MQ=255) ccGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGc > 1:259091/1‑148 (MQ=255) cGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGcc < 4:153455/148‑1 (MQ=255) aTACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAAttt < 1:244294/148‑1 (MQ=255) tACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAAtttt < 8:6692/148‑1 (MQ=255) gCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGa < 6:277051/148‑1 (MQ=255) agatagatATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAAc > 8:188288/1‑148 (MQ=255) aTACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACg > 8:324655/1‑147 (MQ=255) tatCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGacaa > 4:200078/1‑147 (MQ=255) tcaaaaTGCAGAGCATTATGATGTGTAATAAACGGGCGAGCAGATGCCCCAACTGGAATTACCTGGATCATAGGGTTTTCTTCTTCCTTAAAGCCGCGCTCGACCATGAAATGACGGATAGCGGCCAGAATTTTTTAACGGAcaacaa < 1:167214/145‑1 (MQ=255) tCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGacaaca > 7:323157/1‑147 (MQ=255) aaTCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGt > 4:91411/1‑148 (MQ=255) agagCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGAc < 3:302135/148‑1 (MQ=255) tATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGAtt > 4:38188/1‑147 (MQ=255) atgatgGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGAttt < 3:91411/147‑1 (MQ=255) tgatgGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTa < 2:259091/147‑1 (MQ=255) atgGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATc < 6:182448/147‑1 (MQ=255) tgGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCg < 5:302034/147‑1 (MQ=255) tgGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGt > 8:136736/1‑148 (MQ=255) taaACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTg < 7:185552/127‑1 (MQ=255) taaACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTg > 8:185552/1‑127 (MQ=255) taaACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGAt < 3:38188/148‑1 (MQ=255) aaaCGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCg > 1:32674/1‑94 (MQ=255) aaaCGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCg < 2:32674/94‑1 (MQ=255) aaaCGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCg > 5:253757/1‑145 (MQ=255) aaaCGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCg < 6:253757/145‑1 (MQ=255) aaCGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGa < 3:200078/148‑1 (MQ=255) gAGCATATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCAACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAg < 4:281331/148‑1 (MQ=255) gAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGAGACCATGAATTGACGTATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAg < 5:267743/148‑1 (MQ=255) gAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCAACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAg < 4:276874/148‑1 (MQ=255) gCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATTAGGTCCAGa > 6:169691/1‑147 (MQ=255) ccACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGAc > 3:204098/1‑148 (MQ=255) cACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGa > 7:131722/1‑137 (MQ=255) cACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGa < 8:131722/137‑1 (MQ=255) cACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATTACGTTGAc > 2:98036/1‑147 (MQ=255) cACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGAc > 2:43632/1‑147 (MQ=255) tGGAATTACCTGCATCATCGGGGTTTCTACTTCCATACAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATaa > 3:223549/1‑148 (MQ=255) tGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGAc < 7:40435/104‑1 (MQ=255) tGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGAc > 8:40435/1‑104 (MQ=255) tGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATaa > 7:87360/1‑148 (MQ=255) gAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATaa < 7:324655/146‑1 (MQ=255) tACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACt > 1:246020/1‑148 (MQ=255) catcGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACg < 5:224473/129‑1 (MQ=255) catcGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACg > 6:224473/1‑129 (MQ=255) catcGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATcc > 5:98022/1‑148 (MQ=255) atcGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCt < 7:188288/148‑1 (MQ=255) tcGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTg > 4:290776/1‑148 (MQ=255) cGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAgg < 7:20964/109‑1 (MQ=255) cGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAgg > 8:20964/1‑109 (MQ=255) | TACCCGTTCAAAACCGCCTACAACCAGACGTTTCAGATACAGCTCCGGCGCGATACGCAGATACATATCTAAATCCAGAGCATTATGATGGGTAATAAACGGGCGAGCAGATGCCCCACCTGGAATTACCTGCATCATCGGGGTTTCTACTTCCATAAAGCCGCGCGCGACCATGAATTGACGGATAGCGGCCAGAATTTTTGAACGGACAACAAACGTTTGACGGGATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTG > NC_000913/4353953‑4354237 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |