mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.1% | 198.6 / 86.2 | 129 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 215 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4576863 = | 69 (0.720) | 12 (0.130) | 11/270 | 10.0 | 15.2% | intergenic (+8/+49) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| ? | NC_000913 | 4576890 = | 70 (0.790) | intergenic (+35/+22) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC | |||||
| * | ? | NC_000913 | = 2700568 | 97 (1.010) | 9 (0.110) | 9/252 | 10.4 | 10.0% | noncoding (49/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | = 2700581 | 77 (0.930) | noncoding (62/77 nt) | ohsC | sRNA antisense regulator of shoB toxin | |||||
| * | ? | NC_000913 | = 275007 | NA (NA) | 18 (0.190) | 11/284 | 10.5 | NA | noncoding (143/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 275025 | NA (NA) | noncoding (125/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1973294 | 124 (1.300) | 11 (0.120) | 10/278 | 10.8 | 8.4% | coding (46/504 nt) | cheW | purine‑binding chemotaxis protein |
| ? | NC_000913 | = 1973306 | 120 (1.310) | coding (34/504 nt) | cheW | purine‑binding chemotaxis protein | |||||
| * | ? | NC_000913 | 4257736 = | 75 (0.780) | 13 (0.140) | 9/276 | 11.2 | 15.4% | intergenic (+13/‑6) | lexA/dinF | transcriptional repressor of SOS regulon/oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| ? | NC_000913 | 4257762 = | 71 (0.780) | coding (21/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | |||||
| * | ? | NC_000913 | 3132904 = | 99 (1.030) | 11 (0.120) | 9/282 | 11.5 | 10.3% | coding (309/759 nt) | yghR | putative ATP‑binding protein |
| ? | NC_000913 | 3132933 = | 96 (1.030) | coding (280/759 nt) | yghR | putative ATP‑binding protein | |||||
| * | ? | NC_000913 | 1097235 = | NA (NA) | 11 (0.120) | 9/284 | 11.5 | 32.8% | intergenic (+406/+330) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097247 = | 23 (0.240) | intergenic (+418/+318) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097051 = | 101 (1.060) | 11 (0.120) | 9/284 | 11.5 | 10.0% | intergenic (+222/+514) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097250 = | NA (NA) | intergenic (+421/+315) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3270079 | 68 (0.710) | 12 (0.130) | 8/270 | 11.6 | 16.0% | intergenic (+477/+137) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | = 3270083 | 63 (0.710) | intergenic (+481/+133) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | = 2044712 | 109 (1.140) | 11 (0.120) | 9/286 | 11.6 | 9.3% | intergenic (+88/‑226) | asnT/yeeJ | tRNA‑Asn/putative adhesin |
| ? | NC_000913 | = 2044741 | 106 (1.120) | intergenic (+117/‑197) | asnT/yeeJ | tRNA‑Asn/putative adhesin | |||||