New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	643502 =	43 (1.090)	10 (0.270)	9/244	2.9	20.4%	intergenic (+176/+55)	ybdR/rnk	putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase
	?	NC_000913	643524 =	38 (1.030)					intergenic (+198/+33)	ybdR/rnk	putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase

CCATGACGATAATCGCCGCCATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGTGAAT  >  NC_000913/643359‑643649                                                                                                                                                |                                                                                                                                                    ccATGACGATAATCGCCGCCATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGa                                                                                                                                                >  1:69637/1‑149 (MQ=255)                  gccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               <  4:151905/149‑1 (MQ=255)                  gccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               >  2:193702/1‑149 (MQ=255)                  attcactgggcaattccgggcggcgttgcaacccaccttgaagtgcgggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAGTGCAtcctcgg                                                                                                                               >  4:97‑M1/127‑147 (MQ=255)                   ccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGa                                                                                                                                           >  4:99137/1‑136 (MQ=255)                   ccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGa                                                                                                                                           <  3:99137/136‑1 (MQ=255)                   ccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTgg                                                                                                                              <  8:109035/149‑1 (MQ=255)                      tAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGc                                                                                                                            >  5:77760/1‑148 (MQ=255)                        tgggaacttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGAt                                                                                                                                               >  6:44228‑M1/121‑127 (MQ=255)                        tgggaacttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGAt                                                                                                                                               <  5:44228‑M1/7‑1 (MQ=255)                         tCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCa                                                                                                                           >  7:148554/1‑146 (MQ=255)                             aaaTCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAg                                                                                                                    <  6:77760/149‑1 (MQ=255)                                   tATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCg                                                                                                              >  1:180050/1‑149 (MQ=255)                                        ggATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTtgt                                                                                                         >  6:69501/1‑149 (MQ=255)                                              aaaaTGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGa                                                                                                                     >  3:15073/1‑131 (MQ=255)                                              aaaaTGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGa                                                                                                                     <  4:15073/131‑1 (MQ=255)                                                 cccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATg                                                                                                                                              <  2:172619‑M1/8‑1 (MQ=255)                                                 cccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATg                                                                                                                                              >  1:172619‑M1/96‑103 (MQ=255)                                                 aTGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATggg                                                                                                <  2:69637/149‑1 (MQ=255)                                                  ccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCACTCGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGa                                                                                               >  4:138521‑M1/95‑149 (MQ=255)                                                     ttCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGAtt                                                                                             >  2:99700/1‑148 (MQ=255)                                                        tGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAg                                                                                         >  8:120009/1‑149 (MQ=255)                                                          ccATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCa                                                                                       <  2:180050/149‑1 (MQ=255)                                                            aTGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAgg                                                                                     <  1:99700/149‑1 (MQ=255)                                                                       cacaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTa                                                                                                                 <  3:145065/110‑1 (MQ=255)                                                                       cacaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTa                                                                                                                 >  4:145065/1‑110 (MQ=255)                                                                       cacaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTACATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcag                                                                           >  5:21040/1‑148 (MQ=255)                                                                        acaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcag                                                                           >  2:27416/1‑147 (MQ=255)                                                                          aaacgaaacgGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAg                                                                                                                                          >  5:62671/1‑82 (MQ=255)                                                                          aaacgaaacgGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAg                                                                                                                                          <  6:62671/82‑1 (MQ=255)                                                                            acgaaacgGAATAATTTTGCAGCAAAAGTGAACAGTGACAACCACGAAAAATTGCTCATTTTGCTTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGAGCAGAAGGGATTAAAGCAGGTAGTCGACAGCAGCtt                                                                     >  7:6127/1‑149 (MQ=255)                                                                                               cagcaAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGtt                                                   <  5:69501/148‑1 (MQ=255)                                                                                                agcaATAGTTTACAGTGAGTACGAGGATAATTTGCTGTTTTTGCGTATTGATGTTGGGAGTGCATCATCTGGGCAAAGCGAGTTATCGGTTGTGCAGATGTGTTTTATGCTGGTAGTCGCCAGCTGCTTCTGGGTTGTATTCGAGTTcc                                                 <  8:6127/149‑1 (MQ=255)                                                                                                  caAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAg                                               <  7:120009/149‑1 (MQ=255)                                                                                                     aaGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcagca                                                                         >  7:79371/1‑120 (MQ=255)                                                                                                     aaGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcagca                                                                         <  8:79371/120‑1 (MQ=255)                                                                                                               tGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               >  1:38468/1‑56 (MQ=255)                                                                                                               tGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               <  2:38468/56‑1 (MQ=255)                                                                                                                 ccatctgcacaagcgataactcgctttgcccAGAGGATGCACTCGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAg                                               >  5:113969‑M1/32‑134 (MQ=255)                                                                                                                 ccatctgcacaagcgataactcgctttgcccAGAGGATGCACTCGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAg                                               <  6:113969‑M1/103‑1 (MQ=255)                                                                                                                 agaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGt                                <  1:27416/149‑1 (MQ=255)                                                                                                                  gaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTgg                                  <  5:164339/146‑1 (MQ=255)                                                                                                                  gaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTgg                                  >  6:164339/1‑146 (MQ=255)                                                                                                                  gaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGtt                               >  1:179227/1‑149 (MQ=255)                                                                                                                   aaCCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTctgg                                                                 >  7:13122/1‑114 (MQ=255)                                                                                                                   aaCCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTctgg                                                                 <  8:13122/114‑1 (MQ=255)                                                                                                                      cAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCaa                           >  1:2351/1‑149 (MQ=255)                                                                                                                                 gCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCgg                 >  6:125070/1‑148 (MQ=255)                                                                                                                                     tcgctttgcccAGAGGATGCACTCGCATCCTCTTGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGtt            <  8:94114‑M1/138‑1 (MQ=255)                                                                                                                                       gctttgcccAGAGGATGCACTCGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCa                                                <  2:174780‑M1/102‑1 (MQ=255)                                                                                                                                       gctttgcccAGAGGATGCACTCGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCa                                                >  1:174780‑M1/10‑111 (MQ=255)                                                                                                                                          gCGTAAAGAGGATGCGAGTACATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCa        <  6:21040/148‑1 (MQ=255)                                                                                                                                           cGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGt      <  2:2351/149‑1 (MQ=255)                                                                                                                                               cAGAGGATGCATTCGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGaa               >  4:133798‑M1/2‑136 (MQ=255)                                                                                                                                               cAGAGGATGCATTCGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGaa               <  3:133798‑M1/135‑1 (MQ=255)                                                                                                                                               cAGAGGATGCACTCGCATCCTCTTGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGTGAAt  >  7:94114‑M1/2‑149 (MQ=255)                                                                                                                                               aaGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGTGAAt  <  1:193702/149‑1 (MQ=255)                                                                                                                                                AGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGt                                                    <  6:87881‑M1/98‑1 (MQ=255)                                                                                                                                                AGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGt                                                    >  5:87881‑M1/1‑98 (MQ=255)                                                                                                                                                |                                                                                                                                                    CCATGACGATAATCGCCGCCATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGTGAAT  >  NC_000913/643359‑643649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.