New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 888274	24 (0.720)	8 (0.250)	8/250	2.4	25.4%	coding (1546/1686 nt)	ybjL	putative transporter
	?	NC_000913	= 888284	24 (0.750)					coding (1536/1686 nt)	ybjL	putative transporter

TTCAGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCC  >  NC_000913/888127‑888415                                                                                                                                                    |                                                                                                                                              ttCAGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGgcgcg                                                                                                                                              >  5:92760/1‑149 (MQ=255)    aGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAg                                                                                                                                           <  2:151177/149‑1 (MQ=255)         tATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACg                                                                                                                                      >  6:40800/1‑149 (MQ=255)                         aTACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTgc                                                                                                                       <  1:112192/148‑1 (MQ=255)                         aTACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTgc                                                                                                                       >  2:112192/1‑148 (MQ=255)                             cATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCg                                                                                                                   >  7:137978/1‑148 (MQ=255)                                   gatgatTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAacaaca                                                                                                            <  8:137978/149‑1 (MQ=255)                                              cTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTc                                                                                                 <  3:21017/149‑1 (MQ=255)                                                 ccAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCAtt                                                                                              <  6:92760/149‑1 (MQ=255)                                                  cAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTc                                                                                             <  5:40800/149‑1 (MQ=255)                                                         agcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTc                                                                                             <  6:41792/142‑1 (MQ=255)                                                         agcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTc                                                                                             >  5:41792/1‑142 (MQ=255)                                                          gcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccg                                                                                                                               <  1:158251‑M1/107‑17 (MQ=255)                                                          gcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccg                                                                                                                               >  2:158251‑M1/1‑91 (MQ=255)                                                          gcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACa                                                                                     >  2:66752/1‑149 (MQ=255)                                                           cagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACa                                                                                     >  6:49390/1‑148 (MQ=255)                                                                cGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCa                                                                               <  1:138568/149‑1 (MQ=255)                                                                cGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCACGTACCTGCgcgccggcaatggagatcatcagtgatacagctcgcagtaa                                                                                            <  2:64106‑M2/136‑42 (MQ=255)                                                                cGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCACGTACCTGCgcgccggcaatggagatcatcagtgatacagctcgcagtaa                                                                                            >  1:64106‑M2/1‑95 (MQ=255)                                                                     gCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTc                                                                                                 <  2:8020/126‑1 (MQ=255)                                                                     gCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTc                                                                                                 >  1:8020/1‑126 (MQ=255)                                                                             aTAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgc                                                                                                                                   <  2:167930‑M1/84‑13 (MQ=255)                                                                             aTAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgc                                                                                                                                   >  1:167930‑M1/1‑72 (MQ=255)                                                                                ggTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGa                                                               <  1:66752/149‑1 (MQ=255)                                                                                    cccGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAAc                                                           >  6:57460/1‑149 (MQ=255)                                                                                         aTAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACgg                                                      <  5:57460/149‑1 (MQ=255)                                                                                                          tGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCAc                                                  >  5:42840/1‑136 (MQ=255)                                                                                                          tGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCAc                                                  <  6:42840/136‑1 (MQ=255)                                                                                                            ttACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCgcaggtacgtgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacg                                                >  1:64106‑M1/1‑41 (MQ=255)                                                                                                            ttACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCgcaggtacgtgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacg                                                <  2:64106‑M1/136‑96 (MQ=255)                                                                                                               cTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATcc                                >  1:56729/1‑149 (MQ=255)                                                                                                                         tATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccggcaat                                                                                                                          >  7:109066‑M1/1‑28 (MQ=255)                                                                                                                         tATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccggcaat                                                                                                                          <  8:109066‑M1/49‑22 (MQ=255)                                                                                                                                          aTTGCCGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgata                                                                                                         >  7:109066‑M2/1‑21 (MQ=255)                                                                                                                                          aTTGCCGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgata                                                                                                         <  8:109066‑M2/49‑29 (MQ=255)                                                                                                                                              ccGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGcc  <  5:49390/148‑1 (MQ=255)                                                                                                                                               cGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacgtcctgc                                          >  2:158251‑M2/1‑16 (MQ=255)                                                                                                                                               cGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacgtcctgc                                          <  1:158251‑M2/107‑92 (MQ=255)                                                                                                                                                   gcgcAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctat                                                             <  2:167930‑M2/84‑73 (MQ=255)                                                                                                                                                   gcgcAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctat                                                             >  1:167930‑M2/1‑12 (MQ=255)                                                                                                                                                    |                                                                                                                                              TTCAGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCC  >  NC_000913/888127‑888415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.