New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2078529	29 (0.870)	7 (0.230)	7/240	2.6	19.8%	intergenic (+422/+20)	yeeW/yoeD	CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
	?	NC_000913	= 2078541	30 (0.980)					intergenic (+434/+8)	yeeW/yoeD	CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
Rejected: Frequency below/above cutoff threshold.

ACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTT  >  NC_000913/2078398‑2078682                                                                                                                                                  |                                                                                                                                              aCCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTAttgac                                                                                                                                          <  2:110619‑M2/149‑6 (MQ=255)          tGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAATACGGTGCTCCGTgacgcttacttt                                                                                                                                    >  2:168692‑M2/1‑137 (MQ=255)               gTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAATACGGTGCTCCGTgacgcttactttaatc                                                                                                                                >  6:21276‑M2/1‑132 (MQ=255)                 gCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGt                                                                                                                            >  1:1270/1‑147 (MQ=255)                    ttATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGaa                                                                                                                       <  3:103348/149‑1 (MQ=255)                         gCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACAGTATTGACGCTTATTTATTGGTGAGAACTACg                                                                                                                  >  3:121066/1‑149 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTAttgac                                                                                                                                          >  1:124554‑M2/1‑113 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTAttgac                                                                                                                                          <  2:124554‑M2/118‑6 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTgg                                                                                                                             >  5:7221/1‑131 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTgg                                                                                                                             <  6:7221/131‑1 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCAt                                                                                                            <  1:110619/148‑1 (MQ=255)                                   cGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCa                                                                                                        <  2:1270/149‑1 (MQ=255)                                              gACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTc                                                                                              <  4:121066/148‑1 (MQ=255)                                              gACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTc                                                                                              <  6:147839/148‑1 (MQ=255)                                                ccTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCaa                                                                                            >  6:126245/1‑148 (MQ=255)                                                 cTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAaca                                                                                          >  8:102967/1‑149 (MQ=255)                                                   gACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACg                                                                                        >  1:78425/1‑149 (MQ=255)                                                     cAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACgg                                                                                       <  2:78425/148‑1 (MQ=255)                                                       aaaaaTGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTg                                                                                    <  7:102967/149‑1 (MQ=255)                                                        aaaaTGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTg                                                                                    >  1:56083/1‑148 (MQ=255)                                                              aaTTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGc                                                                              <  7:88067/148‑1 (MQ=255)                                                              aaTTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGc                                                                              >  8:88067/1‑148 (MQ=255)                                                                 tCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAg                                                                                                       >  3:7415/1‑120 (MQ=255)                                                                 tCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAg                                                                                                       <  4:7415/120‑1 (MQ=255)                                                                   cAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGTAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTcc                                                                        >  5:58389/1‑149 (MQ=255)                                                                   cAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTAttga                                                                                                                                           >  2:21528‑M2/1‑78 (MQ=255)                                                                                   gTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGTAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGaa                                                        <  6:58389/149‑1 (MQ=255)                                                                                       gAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATg                                                    >  5:43430/1‑149 (MQ=255)                                                                                          cAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATCCCGGCAGTATGCTCAGAATATGgcg                                                 <  2:56083/149‑1 (MQ=255)                                                                                             aaaaaTCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCttatttat                                                                                                                                <  6:160055/67‑1 (MQ=255)                                                                                             aaaaaTCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCttatttat                                                                                                                                >  5:160055/1‑67 (MQ=255)                                                                                                                 cGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATAc                          <  5:126245/149‑1 (MQ=255)                                                                                                                     ttAAAGTAATCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGtt                      <  6:43430/149‑1 (MQ=255)                                                                                                                         aGTAAGCGTCAA‑‑CGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaat                                                                         >  7:112429‑M2/1‑24 (MQ=255)                                                                                                                         aGTAAGCGTCAA‑‑CGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaat                                                                         <  8:112429‑M2/94‑71 (MQ=255)                                                                                                                             aGCGTCAA‑‑CGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcacctccactggaa              >  5:21276‑M2/1‑20 (MQ=255)                                                                                                                                    a‑‑CGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcacctccactggaaggtttat       <  5:62164‑M2/149‑137 (MQ=255)                                                                                                                                           gCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcacctccactggaaggtttatcagta  >  6:62164‑M2/1‑8 (MQ=255)                                                                                                                                              ccGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATg                                                    >  2:75142/1‑96 (MQ=255)                                                                                                                                              ccGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATg                                                    <  1:75142/96‑1 (MQ=255)                                                                                                                                                 tATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGAt                                >  8:8264/1‑113 (MQ=255)                                                                                                                                                  |                                                                                                                                              ACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAA‑‑CGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTT  >  NC_000913/2078398‑2078682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.