Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,335,035 Δ726 bp ymiAyciX ymiA, yciX

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1335035 1335760 726 32 [0] [0] 31 ymiA–yciX ymiA,yciX

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13350340 (0.000)31 (0.930) 25/260 0.5 100% intergenic (+205/‑90) cysB/ymiA N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor/uncharacterized protein
?NC_000913 1335761 = 0 (0.000)intergenic (+303/‑70) yciX/acnA uncharacterized protein/aconitate hydratase 1; aconitase A

CTGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTA  >  NC_000913/1335620‑1335895
                                                                                                                                             |                                                                                                                                      
cttatttctataccgtgcacaatatttttatccctcatatttatagggtaaattacctgtaaagtagtgtctaattacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTtgtg                                                                                                                                  <  2:71927‑M2/7‑1 (MQ=255)
             cgtgcacaatatttttatccctcatatttatagggtaaattacctgtaaagtagtgtctaattacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATAtt                                                                                                                    >  6:148060‑M2/129‑149 (MQ=255)
                gcacaatatttttatccctcatatttatagggtaaattacctgtaaagtagtgtctaattacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCAc                                                                                                                 >  1:46557‑M2/126‑149 (MQ=255)
                    aatatttttatccctcatatttatagggtaaattacctgtaaagtagtgtctaattacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACACt                                                                                                              >  6:20891‑M2/122‑148 (MQ=255)
                                               gtaaattacctgtaaagtagtgtctaattacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGt                                                                                  >  2:77134‑M2/95‑149 (MQ=255)
                                                          gtaaagtagtgtctaattacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTaa                                                                                                                        <  7:104948‑M2/17‑1 (MQ=255)
                                                                     tctaattacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtcgt                                                            >  3:69877‑M2/73‑149 (MQ=255)
                                                                         attacccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTa                                                                             <  4:65121‑M2/60‑1 (MQ=255)
                                                                              ccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGa                                                                                                            <  3:55429‑M2/29‑1 (MQ=255)
                                                                              ccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGa                                                                                                            >  4:55429‑M2/64‑92 (MQ=255)
                                                                              ccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTAc                                                   >  4:46056‑M2/64‑149 (MQ=255)
                                                                              ccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTAc                                                   >  2:74773‑M2/64‑149 (MQ=255)
                                                                              ccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTAc                                                   >  7:96389‑M2/64‑149 (MQ=255)
                                                                              ccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTAc                                                   <  1:77134‑M2/86‑1 (MQ=255)
                                                                              ccgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTAc                                                   <  1:74773‑M2/86‑1 (MQ=255)
                                                                               cgcctcgcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACg                                                  <  4:69877‑M2/87‑1 (MQ=255)
                                                                                     gcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGaa                                              <  5:148060‑M2/91‑1 (MQ=255)
                                                                                     gcaaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGc                                            <  8:96389‑M2/93‑1 (MQ=255)
                                                                                      caaactccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGcc                                           <  2:46557‑M2/94‑1 (MQ=255)
                                                                                           tccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCt                                                     >  5:86076‑M2/51‑134 (MQ=255)
                                                                                           tccagttttcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCt                                                     <  6:86076‑M2/84‑1 (MQ=255)
                                                                                                   tcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAag                                                                           >  6:106545‑M2/43‑104 (MQ=255)
                                                                                                   tcaaatatctatttcaggtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAag                                                                           <  5:106545‑M2/62‑1 (MQ=255)
                                                                                                                    gtcaaaagattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATGAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATaa              >  7:122460‑M2/26‑148 (MQ=255)
                                                                                                                           gattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATaaaa            <  7:111434‑M2/125‑1 (MQ=255)
                                                                                                                           gattgaattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATaaaa            >  8:111434‑M2/19‑143 (MQ=255)
                                                                                                                                aattattcactggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCacta  <  5:20891‑M2/135‑1 (MQ=255)
                                                                                                                                        actggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtcgtc                                                           <  2:98392‑M2/78‑1 (MQ=255)
                                                                                                                                        actggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtcgtc                                                           >  1:98392‑M2/6‑83 (MQ=255)
                                                                                                                                        actggGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATaaaa            >  7:32166‑M2/6‑130 (MQ=255)
                                                                                                                                        actggGTTTGTGTTATCTTTAATATTCAACCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATaaaa            <  8:32166‑M2/125‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                      
CTGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTA  >  NC_000913/1335620‑1335895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: