New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1966969 =	58 (0.640)	3 (0.030)	3/236	NT	5.3%	coding (69/645 nt)	cheZ	chemotaxis regulator, protein phosphatase for CheY
	?	NC_000913	1967014 =	51 (0.580)					coding (24/645 nt)	cheZ	chemotaxis regulator, protein phosphatase for CheY

ATAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCGCAGCAATGATGTTCTC  >  NC_000913/1966867‑1967161                                                                                                                                                    |                                                                                                                                                    tgaagccatttaccgccgcgacgctggaggaaaaactcaacaaaatctttgagaaactgggcatgtgaggatgcgactatgatgcaaccatcaatcaaacctGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTcagca                                                                                                                                                     >  2:169709‑M1/103‑148 (MQ=255)   aGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAgg                                                                                                                                                   >  5:377292/1‑148 (MQ=255)      aCAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGttt                                                                                                                                                >  7:359593/1‑148 (MQ=255)       cAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTttg                                                                                                                                               <  8:359593/148‑1 (MQ=255)       cAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCCTCGGCAATGGCCTGATCGAGCCCCAGTTCCCGCTTACTGTGGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCTGGTttg                                                                                                                                               <  4:206049/148‑1 (MQ=255)         aaCGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTttgat                                                                                                                                             >  5:134588/1‑148 (MQ=255)                      agcGGGGCTGGCGTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCCGGTCCCGCAAACTGTCGCGCAGCATACGCGGCAGGCGGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGcatc                                                                                                                                <  2:337893/146‑1 (MQ=255)                        cGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGcatca                                                                                                                               >  8:310199/1‑147 (MQ=255)                         ggggATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGcatcat                                                                                                                              <  7:310199/147‑1 (MQ=255)                         ggggATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGcatca                                                                                                                               >  1:321538/1‑146 (MQ=255)                          gggATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAg                                                                                                                            <  3:300816/148‑1 (MQ=255)                           ggATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCTGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGt                                                                                                                           <  4:46758/148‑1 (MQ=255)                                gCTTCCGCCGCTTCGGCAATGGCCTGGTCCCGCCCCAGGTCCCGCAAACTGTCGCGCAGCATCCGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCAt                                                                                                                      >  7:246272/1‑148 (MQ=255)                                   tCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCCGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCt                                                                                                                   >  7:342291/1‑148 (MQ=255)                                     cgccgcTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTca                                                                                                                 <  2:321538/148‑1 (MQ=255)                                      gccgcTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTcac                                                                                                                <  6:134588/148‑1 (MQ=255)                                      gccgcTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTcac                                                                                                                <  4:300634/148‑1 (MQ=255)                                      gccgcTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTcac                                                                                                                <  4:306317/148‑1 (MQ=255)                                       ccgcTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTcaca                                                                                                               >  5:20219/1‑148 (MQ=255)                                          cTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGc                                                                                                            <  6:321422/148‑1 (MQ=255)                                          cTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGc                                                                                                            >  5:321422/1‑148 (MQ=255)                                            tCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGcc                                                                                                           >  5:335227/1‑147 (MQ=255)                                               gCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGt                                                                                                       <  8:329718/148‑1 (MQ=255)                                                    ggCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGCCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGACAGCAGGTTTCATTGATGGTTGCATCAAAGTCGAATCCTCACATGCCCAGTTtct                                                                                                   >  8:238114/1‑147 (MQ=255)                                                       cTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCa                                                                                                 >  2:209448/1‑146 (MQ=255)                                                          aTCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGAt                                                                                            <  1:209448/148‑1 (MQ=255)                                                             cAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGAtttt                                                                                         <  6:335227/148‑1 (MQ=255)                                                              aGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTttg                                                                                        >  4:193624/1‑148 (MQ=255)                                                                     gTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGTCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGtt                                                                                 <  8:342291/148‑1 (MQ=255)                                                                       tCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGc                                                                                                                        >  4:374827/1‑107 (MQ=255)                                                                       tCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGc                                                                                                                        <  3:374827/107‑1 (MQ=255)                                                                       tCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGtttt                                                                               >  2:266909/1‑148 (MQ=255)                                                                          cGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTtcc                                                                            >  3:22718/1‑148 (MQ=255)                                                                           gCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTtcct                                                                           <  8:246272/148‑1 (MQ=255)                                                                            cAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTtcctc                                                                          >  8:9855/1‑148 (MQ=255)                                                                                       gcagcaTACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTTACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCgcgg                                                               >  8:245819/1‑148 (MQ=255)                                                                                            aTACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGt                                                           >  6:196611/1‑147 (MQ=255)                                                                                             tACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTTACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTaa                                                         <  7:245819/148‑1 (MQ=255)                                                                                             tACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTaa                                                         <  7:238114/148‑1 (MQ=255)                                                                                               cgcgTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTaaa                                                        <  1:266909/147‑1 (MQ=255)                                                                                               cgcgTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAAt                                                       >  6:160503/1‑148 (MQ=255)                                                                                                      tgctgacgagcattcagctggcgatatcattgcgcgcatcggcagcAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTca                                                >  2:169709‑M2/47‑148 (MQ=255)                                                                                                       gctgacgagcattcagctggcgatatcattgcgcgcatcggcagcAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTaa                                                         >  2:141196‑M2/46‑138 (MQ=255)                                                                                                       gctgacgagcattcagctggcgatatcattgcgcgcatcggcagcAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTaa                                                         <  1:141196‑M2/93‑1 (MQ=255)                                                                                                            cGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTttgt                                                                                       <  4:157556/103‑1 (MQ=255)                                                                                                            cGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTttgt                                                                                       >  3:157556/1‑103 (MQ=255)                                                                                                                          atatCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGccccc                            >  3:102865/1‑148 (MQ=255)                                                                                                                             tCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCt                         >  6:89421/1‑148 (MQ=255)                                                                                                                               gCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGcggcgg                                                            >  8:439496/1‑111 (MQ=255)                                                                                                                               gCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGcggcgg                                                            <  7:439496/111‑1 (MQ=255)                                                                                                                                ccAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTgc                      <  6:20219/148‑1 (MQ=255)                                                                                                                                   gCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGcgcc                   >  7:294451/1‑148 (MQ=255)                                                                                                                                     tGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGcgccg                  >  3:381004/1‑147 (MQ=255)                                                                                                                                       aaTGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCgcag               >  1:245743/1‑148 (MQ=255)                                                                                                                                       aaTGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCgcag               >  2:197706/1‑148 (MQ=255)                                                                                                                                        aTGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCgcag               >  8:43475/1‑147 (MQ=255)                                                                                                                                            tCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCGCAGCAat           >  1:446359/1‑147 (MQ=255)                                                                                                                                             cGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCGCAGCAatga         >  5:335190/1‑148 (MQ=255)                                                                                                                                              gTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCGCAGCAatg          <  4:102865/146‑1 (MQ=255)                                                                                                                                                cagcAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGcc                                      >  5:307889‑M2/5‑116 (MQ=255)                                                                                                                                                cagcAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGcc                                      <  6:307889‑M2/112‑1 (MQ=255)                                                                                                                                                    agGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCGCAGCAATGATGTtctc  <  7:9855/148‑1 (MQ=255)                                                                                                                                                    agGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGACCCCGCTTGCGCCGCAGCAATGATGTtctc  >  7:40547/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGCTCGTCAGCAGGTTTGATTGATGGTTGCATCATAGTCGCATCCTCACATGCCCAGTTTCTCAAAGATTTTGTTGAGTTTTTCCTCCAGCGTCGCGGCGGTAAATGGCTTCACCACATAGCCACTGGCCCCCGCTTGCGCCGCAGCAATGATGTTCTC  >  NC_000913/1966867‑1967161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.