New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4198886	38 (1.040)	4 (0.120)	4/248	3.8	11.3%	coding (97/672 nt)	nfi	endonuclease V; deoxyinosine 3' endonuclease
	?	NC_000913	= 4198928	27 (0.780)					coding (139/672 nt)	nfi	endonuclease V; deoxyinosine 3' endonuclease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGTCGAGTATAAAGTTGCCCGCATCGCCACCACCATGCCTTACATTCCAGGTTTT  >  NC_000913/4198750‑4199020                                                                                                                                         |                                                                                                                                       gCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCg                                                                                                                            >  4:66420/1‑149 (MQ=255)      gACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGttt                                                                                                                       <  5:116501/149‑1 (MQ=255)             tGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTg                                                                                                                      >  4:119802/1‑143 (MQ=255)             tGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTg                                                                                                                      <  3:119802/143‑1 (MQ=255)             tGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAgg                                                                                                                >  5:135323/1‑149 (MQ=255)                  aGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGAAGTCGGGTTTGAGCAGGGCGga                                                                                                           <  3:66420/149‑1 (MQ=255)                      tCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGaa                                                                                                        <  6:135323/148‑1 (MQ=255)                         ccGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGTATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGa                                                                                                    <  6:159651/149‑1 (MQ=255)                             tAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCgg                                                                                                                           >  1:161023/1‑122 (MQ=255)                             tAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCgg                                                                                                                           <  2:161023/122‑1 (MQ=255)                                 gAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCg                                                                                                                            <  4:106956/117‑1 (MQ=255)                                 gAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCg                                                                                                                            >  3:106956/1‑117 (MQ=255)                                 gAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAgcg                                                                                            >  1:24897/1‑149 (MQ=255)                                       ttATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATg                                                                                      <  4:22143/149‑1 (MQ=255)                                         aTGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGt                                                                                    >  5:72535/1‑149 (MQ=255)                                           ggATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGtg                                                                                   <  2:24897/148‑1 (MQ=255)                                                        ttACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGga                                                                                                           <  2:4939/111‑1 (MQ=255)                                                        ttACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGga                                                                                                           >  1:4939/1‑111 (MQ=255)                                                                  aacaaATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAg                                                                                                                    >  2:91099/1‑92 (MQ=255)                                                                  aacaaATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAg                                                                                                                    <  1:91099/92‑1 (MQ=255)                                                                       aTCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGt                                                      >  1:43261/1‑149 (MQ=255)                                                                               ggCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCAGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGCTGGTGCTGCTGAAATATCCCTCGCTAGAGATGGTCGAGtat                                               >  4:31806/1‑148 (MQ=255)                                                                                  ttcttcTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGa                                                                            <  3:62996/116‑1 (MQ=255)                                                                                  ttcttcTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGa                                                                            >  4:62996/1‑116 (MQ=255)                                                                                        tgtgATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGc                                                                >  8:92550/1‑122 (MQ=255)                                                                                        tgtgATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGc                                                                <  7:92550/122‑1 (MQ=255)                                                                                         gtgATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATc                                                                      >  5:76382/1‑115 (MQ=255)                                                                                         gtgATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATc                                                                      <  6:76382/115‑1 (MQ=255)                                                                                                  gAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGtgctg                                                                                <  4:114265/96‑1 (MQ=255)                                                                                                  gAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGtgctg                                                                                >  3:114265/1‑96 (MQ=255)                                                                                                         gACTCGTTAATGATCCAGCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGTGCGGCGATGGTGCTGCTGAAATATCCCTCGCTGGAGCTGGTCGAGTATAAAGTTGCCCGCATCGCCACCACCAt                     <  3:31806/148‑1 (MQ=255)                                                                                                          aCTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGTCGAGTATAAAGTTGCCCGCATCGCCACCACCATGc                   >  2:138609/1‑149 (MQ=255)                                                                                                              gATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGTCGAGtat                                               <  5:73312/117‑1 (MQ=255)                                                                                                              gATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGTCGAGtat                                               >  6:73312/1‑117 (MQ=255)                                                                                                                   aGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCt                                                                   <  5:99582/92‑1 (MQ=255)                                                                                                                   aGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCt                                                                   >  6:99582/1‑92 (MQ=255)                                                                                                                      tCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGTCGAGTATAAAGTTGCCCGCATCGCCACCACCATGCCTTACATTCCAg       <  6:72535/149‑1 (MQ=255)                                                                                                                           cGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGTCGAGTATAAAGTTGCCCGCATCGCCACCACCATGCCTTACATTCCAGGtttt  <  2:43261/149‑1 (MQ=255)                                                                                                                                         |                                                                                                                                       GCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCAGGGCGGAGAAGTGACGCGAGCGGCGATGGTGCTGCTGAAATATCCCTCGCTTGAGCTGGTCGAGTATAAAGTTGCCCGCATCGCCACCACCATGCCTTACATTCCAGGTTTT  >  NC_000913/4198750‑4199020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.