New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1733711 =NA (NA)9 (0.270) 8/232 2.8 NA intergenic (+8/+43) lhr/grxD putative ATP‑dependent helicase/glutaredoxin‑4
?NC_000913 1733741 = NA (NA)intergenic (+38/+13) lhr/grxD putative ATP‑dependent helicase/glutaredoxin‑4

TTTACGCTAACAGAAGTGAATGATCTACCGGTCCGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGATATCACAACCGCCGACCAGCTCGCCGTCAAC  >  NC_000913/1733596‑1733876
                                                                                                                                                 |                                                                                                                                       
tttACGCTAACAGAAGTGAATGATCTACCGGTCCGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTg                                                                                                                                      >  6:149235/1‑149 (MQ=255)
  tACGCTAACAGAAGTGAATGATCTACCGGTCCGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGc                                                                                                                                     <  2:159954/148‑1 (MQ=255)
        aaCAGAAGTGAATGATCTACCGGTCCGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACg                                                                                                                               >  4:70531/1‑148 (MQ=255)
              aGTGAATGATCTACCGGTCCGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGattatt                                                                                                                        <  3:70531/149‑1 (MQ=255)
               gTGAATGATCTACCGGTCCGGCAACCGCCGCTGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATACGTCAGTATTGCCGGACGGATTATTc                                                                                                                       >  8:119103/1‑149 (MQ=255)
                 gAATGATCTACCGGTCCGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTcc                                                                                                                      <  4:15270/148‑1 (MQ=255)
                                 cGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTc                                                                                                        >  1:74253/1‑146 (MQ=255)
                                 cGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTc                                                                                                        <  2:74253/146‑1 (MQ=255)
                                 cGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGa                                                                                                     >  6:133158/1‑149 (MQ=255)
                                    cAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACtt                                                                                                  <  5:149235/149‑1 (MQ=255)
                                           cGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTg                                                                                                                                      >  6:13098/1‑106 (MQ=255)
                                           cGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTg                                                                                                                                      <  5:13098/106‑1 (MQ=255)
                                           agcagctgatcaaagaaactgccgctaaatacaagtctgaagagccggacgcggaataatccgtcctgcaatactgacggatgcccgttcgcatccgtcagtATTGCAGGACGGat                                                                                                                            <  4:59022‑M2/14‑1 (MQ=255)
                                           agcagctgatcaaagaaactgccgctaaatacaagtctgaagagccggacgcggaataatccgtcctgcaatactgacggatgcccgttcgcatccgtcagtATTGCAGGACGGat                                                                                                                            >  3:59022‑M2/103‑116 (MQ=255)
                                                 ttACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCgg                                                                                       >  4:67465/1‑147 (MQ=255)
                                                      aaagaaactgccgctaaatacaagtctgaagagccggacgcggaataatccgtcctgcaatactgacggatgcccgttcgcatccgtcagtATTGCAGGACGGATTATTcc                                                                                                                      >  5:33889‑M2/92‑111 (MQ=255)
                                                      aaagaaactgccgctaaatacaagtctgaagagccggacgcggaataatccgtcctgcaatactgacggatgcccgttcgcatccgtcagtATTGCAGGACGGATTATTcc                                                                                                                      <  6:33889‑M2/20‑1 (MQ=255)
                                                         ctgcGTGAGGCGGGATTTTCAAGTTCGCCACAACGGCTGGATTGGGGATAGAGAAAGCACTGACGGATGCCAGTTCGCATCCGTCAGTATTGCAGGACGGAGTATTCCGCGTCCGGCGCTTCAGACTTGTATTTAGCGGCAGTTGCt                                                                               <  6:82512/147‑1 (MQ=255)
                                                                  gCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAgctg                                                                    >  3:46996/1‑149 (MQ=255)
                                                                               gTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCa                                                       <  4:46996/149‑1 (MQ=255)
                                                                                    ccACAAGGGCTTGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTcc                                                                                                                >  5:15142/1‑87 (MQ=255)
                                                                                    ccACAAGGGCTTGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTcc                                                                                                                <  6:15142/87‑1 (MQ=255)
                                                                                               ggaataatccgtcctgcaatACTGACGGATGCGAACGGGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCttt                                                                             >  5:33889‑M1/21‑111 (MQ=255)
                                                                                               ggaataatccgtcctgcaatACTGACGGATGCGAACGGGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCttt                                                                             <  6:33889‑M1/91‑1 (MQ=255)
                                                                                                     atccgtcctgcaatACTGACGGATGCGAACGGGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAgctgct                                                                  <  4:59022‑M1/102‑1 (MQ=255)
                                                                                                     atccgtcctgcaatACTGACGGATGCGAACGGGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAgctgct                                                                  >  3:59022‑M1/15‑116 (MQ=255)
                                                                                                       gATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCa                                    <  8:99349/144‑1 (MQ=255)
                                                                                                       gATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCa                                    >  7:99349/1‑144 (MQ=255)
                                                                                                        aTAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGatat                              >  8:104273/1‑149 (MQ=255)
                                                                                                             gaAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGATATCACaa                         >  1:20943/1‑149 (MQ=255)
                                                                                                                    CTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGata                               >  1:176135‑M1/1‑136 (MQ=255)
                                                                                                                    CTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGata                               <  2:176135‑M1/136‑1 (MQ=255)
                                                                                                                     tgacggatgcgaacgggcatccgtcagtATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACAttt                                          >  8:96577‑M2/29‑124 (MQ=255)
                                                                                                                     tgacggatgcgaacgggcatccgtcagtATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACAttt                                          <  7:96577‑M2/96‑1 (MQ=255)
                                                                                                                     tgacggatgcgaacgggcatccgtcagtATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGat                                >  1:19802‑M2/29‑134 (MQ=255)
                                                                                                                     tgacggatgcgaacgggcatccgtcagtATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGat                                <  2:19802‑M2/106‑1 (MQ=255)
                                                                                                                         ggatgcgaacgggcatccgtcagtATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGATATCACAACCGCCGACCAGc             >  2:21735‑M2/25‑149 (MQ=255)
                                                                                                                             GCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACAttt                                          >  6:149140‑M1/1‑116 (MQ=255)
                                                                                                                             GCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACAttt                                          <  5:149140‑M1/116‑1 (MQ=255)
                                                                                                                              CCCGTTCGCATCCGTCAGTATTGCAGGACGGATTCTTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGATATCACAACCGCCGACCAGCTCGcc        >  7:119103‑M1/1‑149 (MQ=255)
                                                                                                                                 gTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGATATCACAACCGCCGACCAGCTCGCCGTc     <  3:67465/149‑1 (MQ=255)
                                                                                                                                     gcatccgtcagtATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGATATCACAACCGCCGACCAGCTCGCCGTCAAc  <  7:104273‑M2/136‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                       
TTTACGCTAACAGAAGTGAATGATCTACCGGTCCGGCAAACGCCGATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACGCTGATACATTTCGATCACGATATCACAACCGCCGACCAGCTCGCCGTCAAC  >  NC_000913/1733596‑1733876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.