mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3881507 = | 120 (1.300) | 3 (0.030) | 3/242 | NT | 2.9% | coding (815/1101 nt) | dnaN | DNA polymerase III, beta subunit |
| ? | NC_000913 | 3881592 = | 91 (1.060) | coding (730/1101 nt) | dnaN | DNA polymerase III, beta subunit | |||||
| * | ? | NC_000913 | = 3339379 | 92 (1.000) | 3 (0.030) | 3/244 | NT | 3.0% | coding (687/810 nt) | mlaF | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| ? | NC_000913 | = 3339417 | 107 (1.230) | coding (649/810 nt) | mlaF | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein | |||||
| * | ? | NC_000913 | 2657297 = | 104 (1.130) | 4 (0.050) | 4/250 | NT | 4.0% | coding (1639/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU |
| ? | NC_000913 | 2657328 = | 92 (1.040) | coding (1608/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU | |||||
| * | ? | NC_000913 | 2574924 = | 75 (0.810) | 3 (0.030) | 3/248 | NT | 4.1% | coding (80/702 nt) | eutQ | RmlC‑like cupin domain protein |
| ? | NC_000913 | 2574962 = | 69 (0.780) | coding (42/702 nt) | eutQ | RmlC‑like cupin domain protein | |||||
| * | ? | NC_000913 | = 2011761 | 108 (1.170) | 3 (0.030) | 3/248 | NT | 2.8% | pseudogene (280/678 nt) | yedN | pseudogene, IpaH/YopM family |
| ? | NC_000913 | = 2011775 | 108 (1.230) | pseudogene (266/678 nt) | yedN | pseudogene, IpaH/YopM family | |||||
| * | ? | NC_000913 | 1694954 = | 74 (0.800) | 3 (0.030) | 3/250 | NT | 4.5% | coding (1118/1812 nt) | uidA | beta‑D‑glucuronidase |
| ? | NC_000913 | 1694995 = | 56 (0.630) | coding (1077/1812 nt) | uidA | beta‑D‑glucuronidase | |||||
| * | ? | NC_000913 | = 1654725 | 72 (0.780) | 3 (0.030) | 3/246 | NT | 4.3% | coding (417/1215 nt) | rspA | bifunctional D‑altronate/D‑mannonate dehydratase |
| ? | NC_000913 | = 1654746 | 67 (0.770) | coding (396/1215 nt) | rspA | bifunctional D‑altronate/D‑mannonate dehydratase | |||||
| * | ? | NC_000913 | 1570641 = | 109 (1.180) | 3 (0.040) +ATAACGTTGTAAA |
3/234 | NT | 2.7% | intergenic (‑152/+4) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666120 = | 134 (1.450) | intergenic (‑310/+60) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | = 739779 | 105 (1.140) | 4 (0.050) | 4/242 | NT | 4.0% | coding (273/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding |
| ? | NC_000913 | = 739800 | 92 (1.070) | coding (294/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding | |||||
| * | ? | NC_000913 | 493714 = | 70 (0.760) | 3 (0.030) | 3/246 | NT | 4.6% | coding (1623/1932 nt) | dnaX | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| ? | NC_000913 | 493780 = | 57 (0.650) | coding (1689/1932 nt) | dnaX | DNA polymerase III/DNA elongation factor III, tau and gamma subunits | |||||