mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.5% | 43.0 / 103.2 | 86 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 53 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 42 (0.470) | 17 (0.220) | 17/248 | 3.7 | 32.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 33 (0.420) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542682 = | 59 (0.660) | 9 (0.110) | 9/262 | 5.9 | 10.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 101 (1.210) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 275149 | NA (NA) | 7 (0.080) | 7/278 | 6.9 | 7.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 451381 = | 91 (1.030) | coding (230/948 nt) | cyoA | cytochrome o ubiquinol oxidase subunit II | |||||
| * | ? | NC_000913 | 273955 = | NA (NA) | 7 (0.080) | 7/280 | 6.9 | 7.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 451384 | 86 (0.960) | coding (227/948 nt) | cyoA | cytochrome o ubiquinol oxidase subunit II | |||||
| * | ? | NC_000913 | 3993706 = | 120 (1.350) | 6 (0.070) | 6/266 | 7.1 | 5.5% | intergenic (+7/+33) | cyaA/cyaY | adenylate cyclase/iron‑dependent inhibitor of iron‑sulfur cluster formation; frataxin; iron‑binding and oxidizing protein |
| ? | NC_000913 | 3993732 = | 91 (1.070) | intergenic (+33/+7) | cyaA/cyaY | adenylate cyclase/iron‑dependent inhibitor of iron‑sulfur cluster formation; frataxin; iron‑binding and oxidizing protein | |||||
| * | ? | NC_000913 | 483821 = | 103 (1.160) | 6 (0.070) | 6/266 | 7.1 | 6.4% | coding (583/3150 nt) | acrB | multidrug efflux system protein |
| ? | NC_000913 | 483883 = | 79 (0.930) | coding (521/3150 nt) | acrB | multidrug efflux system protein | |||||
| * | ? | NC_000913 | 105361 = | 163 (1.830) | 4 (0.050) | 4/256 | 7.8 | 2.6% | coding (57/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein |
| ? | NC_000913 | = 105357 | 152 (1.870) | coding (53/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.070) | 4/262 | 7.9 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4094343 = | NA (NA) | 4 (0.050) | 4/266 | 8.0 | 4.0% | noncoding (28/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094603 = | 97 (1.150) | noncoding (288/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 4094343 = | NA (NA) | 4 (0.050) | 4/266 | 8.0 | 4.5% | noncoding (28/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094511 = | 84 (0.990) | noncoding (196/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||