BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	148 [0]	[0] 147	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	135 (1.160)	96/272	0.0	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
*	?	NC_000913	3815941 =	0 (0.000)	135 (1.160)	96/272	0.0	100%	pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

Only 100 of 148 total aligned reads displayed.

AACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGG  >  NC_000913/3815710‑3816005

aaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                                    <  1:925731‑M1/150‑2 (MQ=255)

aaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                                    <  1:1375589‑M1/150‑2 (MQ=255)

 aCTTTAACACCTGCTGGCTAAGCGCAATTTCACTAAACTGGCGCTGATCAGTCTTCATGCATTCCCTCCACATTTTACTTTTTAACACCACAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCTAGCGCCGCCTTCTGccg                                                                                                                                                   <  2:517276/150‑3 (MQ=255)

   tttAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCCGCGCCGCCTTCTGCcgtc                                                                                                                                                 >  1:714503‑M1/1‑146 (MQ=255)

   tttAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                                 >  1:1188233‑M1/1‑146 (MQ=255)

   tttAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                                 >  1:278850‑M1/1‑146 (MQ=255)

     tAACGCCTGCTTGCTAAGCGCAAATTCAATGAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTGCAGACAAAAAAAAGGCGCCTCAGCAGTTTCT‑TTTAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                               <  1:1173748‑M1/150‑7 (MQ=255)

        cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                                                                            <  3:455101‑M1/150‑10 (MQ=255)

          ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                          <  1:644467‑M1/150‑12 (MQ=255)

           cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                         <  1:1023016‑M1/150‑13 (MQ=255)

           cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                         <  1:983115‑M1/150‑13 (MQ=255)

           cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                         <  1:79421‑M1/150‑13 (MQ=255)

           cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                         >  2:726232‑M1/1‑138 (MQ=255)

           cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                         <  1:487479‑M1/150‑13 (MQ=255)

                 gctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                                   <  1:345959‑M1/150‑19 (MQ=255)

                 gctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                                   >  1:893609‑M1/1‑132 (MQ=255)

                   tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga                                                                                                                                 >  3:254848‑M1/1‑130 (MQ=255)

                    actcgcaaaTACAATAACCTGGCGCTGATATGGTTTCATGCCTGCGCACCTCATCTTACTTATCAACAGACAAAAAAAAGGCGACTCATCCGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcacctgcacttcaatgat                                                                                                                                <  4:534211‑M1/147‑22 (MQ=255)

                    aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                                >  3:257969‑M1/1‑129 (MQ=255)

                    aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                                <  1:1398473‑M1/150‑22 (MQ=255)

                    aaGCCCAAATTCTATAGTCTGGCGCTGATATGGTTTCTTGCCTTCGCTCCTCTTCTTCCTTTTCAACAGACAAGAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                                <  1:639503‑M1/150‑22 (MQ=255)

                     aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                               >  4:316268‑M1/1‑128 (MQ=255)

                     aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                               >  3:123328‑M1/1‑128 (MQ=255)

                        gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                            <  2:654761‑M1/150‑26 (MQ=255)

                         cAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                                                                           >  1:18558‑M1/1‑124 (MQ=255)

                          aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                          >  1:534334‑M1/1‑123 (MQ=255)

                            aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgt                                                                                                                        <  3:80450‑M1/150‑30 (MQ=255)

                            aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgt                                                                                                                        >  1:638092‑M1/1‑121 (MQ=255)

                             ttCCATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCAACAAACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtc                                                                                                                       <  4:117068‑M1/150‑31 (MQ=255)

                                aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttc                                                                                                                    >  2:1237628‑M1/1‑117 (MQ=255)

                                 aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                                   <  2:614408‑M1/150‑35 (MQ=255)

                                 aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                                   <  3:355948‑M1/150‑35 (MQ=255)

                                 aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                                   <  1:1020990‑M1/150‑35 (MQ=255)

                                 aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                                   <  2:1006489‑M1/150‑35 (MQ=255)

                                 aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACATTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                                   >  1:1087171‑M1/1‑116 (MQ=255)

                                    agctgGCGCTGATATGGTGTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                                <  2:287532‑M1/148‑38 (MQ=255)

                                      cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAAACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                              <  2:1024867‑M1/150‑40 (MQ=255)

                                          cgcTGATATGGTTTCATGCCTTCGCACCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                          <  2:1115993‑M1/150‑44 (MQ=255)

                                              gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                                                                      >  3:482028‑M1/1‑103 (MQ=255)

                                                      ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                                                                              <  3:248997‑M1/150‑56 (MQ=255)

                                                       tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                                                                             >  1:1347434‑M1/1‑94 (MQ=255)

                                                       tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                                 >  4:548648‑M1/1‑94 (MQ=255)

                                                        cATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                            <  2:654102‑M1/150‑58 (MQ=255)

                                                        cATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                            <  3:383825‑M1/150‑58 (MQ=255)

                                                          tGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtct                                                                                          <  2:1149818‑M1/150‑60 (MQ=255)

                                                                cGCCCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaaggatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                                    <  2:849322‑M1/150‑66 (MQ=255)

                                                                  ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca                                                                                  >  3:173202‑M1/1‑83 (MQ=255)

                                                                    cctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                                >  1:811729‑M1/1‑81 (MQ=255)

                                                                    cctcATCCTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                                <  3:591709‑M1/150‑70 (MQ=255)

                                                                       cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc                                                                             >  4:204236‑M1/1‑78 (MQ=255)

                                                                         tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                           <  1:726232‑M1/150‑75 (MQ=255)

                                                                         tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagactt                                                                           >  2:273713‑M1/1‑76 (MQ=255)

                                                                          cTTACTTTTCTGCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatggtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                           <  2:520169‑M1/150‑75 (MQ=255)

                                                                          cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                           <  2:986624‑M1/150‑75 (MQ=255)

                                                                           ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttca                                                                         >  2:361770‑M1/1‑74 (MQ=255)

                                                                            tACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                        <  1:1131124‑M1/150‑78 (MQ=255)

                                                                            tACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                        >  1:202575‑M1/1‑73 (MQ=255)

                                                                             aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                       <  2:1188233‑M1/150‑79 (MQ=255)

                                                                             aCTTTTCCGCGGACAAAAAAAAGGCGTCTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCCCCTTCTGCcgtcccctgcccttccatgctgcgcccgtcttcggtcatcactacgtgcatgtcggtcgctgcggcagagtcttcaac                                                                       <  1:1454463‑M1/150‑79 (MQ=255)

                                                                                 ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtat                                                                   >  1:117893‑M1/1‑68 (MQ=255)

                                                                                      cAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccag                                                              >  3:411505‑M1/1‑63 (MQ=255)

                                                                                       aGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                             >  2:444706‑M1/1‑62 (MQ=255)

                                                                                       aGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                                     >  1:1193670‑M1/1‑62 (MQ=255)

                                                                                       aGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                                     <  2:1193670‑M1/110‑49 (MQ=255)

                                                                                        gACAAAAAAAAGGCGACTAATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggcctctgcggcagagtcttcaacgtattacagct                                                            >  2:1418993‑M1/1‑61 (MQ=255)

                                                                                           aaaaaaaaGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgc                                                         >  2:1460158‑M1/1‑58 (MQ=255)

                                                                                           aaaaaaaaGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgc                                                         >  2:364644‑M1/1‑58 (MQ=255)

                                                                                             aaaaaaGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaa                                                       >  3:85204‑M1/1‑56 (MQ=255)

                                                                                               ttaaggCGACTGATGAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac                                                     >  2:773021‑M1/3‑54 (MQ=255)

                                                                                               ttaaggCGACTGATGAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac                                                     >  4:428537‑M1/3‑54 (MQ=255)

                                                                                                 aaGGCGACTGATGAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccg                                                   >  4:467764‑M1/1‑52 (MQ=255)

                                                                                                  aGGCGACTGATGAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgc                                                  >  2:1245199‑M1/1‑51 (MQ=255)

                                                                                                    gCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctt                                                >  3:605831‑M1/1‑49 (MQ=255)

                                                                                                          catcaGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgt                                          <  2:13925‑M1/150‑108 (MQ=255)

                                                                                                           atcaGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                         <  2:202575‑M1/150‑109 (MQ=255)

                                                                                                           atcaGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                         >  1:1265834‑M1/1‑42 (MQ=255)

                                                                                                              aGTCGCC‑TTAAAAATTAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                                      <  3:1177‑M1/150‑112 (MQ=255)

                                                                                                                   cc‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                      >  1:276433‑M1/1‑34 (MQ=255)

                                                                                                                   cc‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                      <  2:276433‑M1/97‑64 (MQ=255)

                                                                                                                    c‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                 <  3:216685‑M1/117‑85 (MQ=255)

                                                                                                                    c‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                 >  4:216685‑M1/1‑33 (MQ=255)

                                                                                                                       tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagtgccttcaacgtattccagatcgcataccgcttcgccgttcacaattccga                              <  4:123328‑M1/150‑120 (MQ=255)

                                                                                                                       tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                              <  3:316268‑M1/150‑120 (MQ=255)

                                                                                                                         aaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca                            <  1:1152843‑M1/150‑122 (MQ=255)

                                                                                                                            aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaa                         >  1:1381836‑M1/1‑26 (MQ=255)

                                                                                                                             tCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaa                        >  2:808645‑M1/1‑25 (MQ=255)

                                                                                                                                gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactg                     <  2:1087171‑M1/150‑129 (MQ=255)

                                                                                                                                  ttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg                   >  1:210789‑M1/1‑20 (MQ=255)

                                                                                                                                     ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggct                <  1:383763‑M1/150‑134 (MQ=255)

                                                                                                                                     ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactccggct                >  1:776137‑M1/1‑17 (MQ=255)

                                                                                                                                      cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcta               <  1:1264634‑M1/150‑135 (MQ=255)

                                                                                                                                      cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcta               <  2:309717‑M1/150‑135 (MQ=255)

                                                                                                                                       aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctac              >  2:1351991‑M1/1‑15 (MQ=255)

                                                                                                                                        gcgcCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctacc             >  4:302374‑M1/1‑14 (MQ=255)

                                                                                                                                           ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatc          >  2:789300‑M1/1‑11 (MQ=255)

                                                                                                                                            cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc         >  4:450347‑M1/1‑10 (MQ=255)

                                                                                                                                            cgccTTCTGCcgtcccctgcacatcaatgatgcgcccgacctcggtcaccactacgttaatgtcggtcactgcggcagagtcttcaacgcactccagatcgcaaaccgcttcgccgttcacaaagccgacagaaaaagcggctaccatcc         >  2:414386‑M1/1‑10 (MQ=255)

                                                                                                                                              tcatatgccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcgtgtcggtctctgcggcagagtcttcaacctattccagatcgcaaaccgcttcgccgttcactattccgacataaactgcggctaccatccct       <  2:114459‑M1/145‑143 (MQ=255)

                                                                                                                                              ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatgcct       <  4:503752‑M1/150‑143 (MQ=255)

                                                                                                                                                   tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcat  >  2:760189‑M1/1‑3 (MQ=255)

AACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCC‑TTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGG  >  NC_000913/3815710‑3816005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`