New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1633479 =	0 (0.000)	4 (0.140)	4/208	2.9	72.7%	intergenic (+174/‑143)	ydfK/pinQ	cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase
	?	NC_000913	1633499 =	3 (0.110)					intergenic (+194/‑123)	ydfK/pinQ	cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase

CACTTTAACAACATTTTGCTCCACTTTTCCACGACCAAACAACTTGAAATCTGGTTAAAATAACACGCAACACTATTCTTCTTCCTTGAGTCCGCCCGGAACTCGAAAAACAAACCGAGTTAAAGCCATTTTTCACAAAATCGATTTTGGGTCTCACCAAAATTACGGG  >  NC_000913/1633336‑1633504                                                                                                                                                |                          taagcaaaaatttgagacatagtgagactctatacgaaattggtgttcatatcataatgcatctcagaaaataattatgattatttttgtgcatatttgtatgtacacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTg                      >  5:39900‑M1/144‑149 (MQ=255)  aagcaaaaatttgagacatagtgagactctatacgaaaatggtgttcatatcataatgcatctcagaaaataattatgattatttttgtgcatatttgtatgtacacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTgg                     <  4:154023‑M1/7‑1 (MQ=255)                                                              tctcagaaaataattatgattatttttgtgcatatttgtatgtacacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTgg                     >  3:24543‑M1/83‑89 (MQ=255)                                                              tctcagaaaataattatgattatttttgtgcatatttgtatgtacacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTgg                     <  4:24543‑M1/7‑1 (MQ=255)                                                                           ttatgattatttttgtgcatatttgtatgtacacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTGGGTCTCACCAAAATTACggg  <  2:71760‑M1/26‑1 (MQ=255)                                                                           ttatgattatttttgtgcatatttgtatgtacacgttcgaaaataaacgaatgcctatgcaaccccgtaATTTTGGGTCTCACCAAAATTACggg  >  1:71760‑M1/70‑95 (MQ=255)                                                                                             atatttgtatgtacacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTGGGTCTCACCAAAATTACgg   >  5:18901‑M1/52‑76 (MQ=255)                                                                                             atatttgtatgtacacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTGGGTCTCACCAAAATTACgg   <  6:18901‑M1/25‑1 (MQ=255)                                                                                                          cacgttcgaaaataaacgaatgcgtatgcaaccccgtaATTTTgg                     <  2:27277‑M1/7‑1 (MQ=255)                                                                                                                  aaaataaacgaatgcgtatgcaaccccgtaATTTTgg                     <  3:60717‑M1/7‑1 (MQ=255)                                                                                                                  aaaataaacgaatgcgtatgcaaccccgtaATTTTgg                     >  4:60717‑M1/31‑37 (MQ=255)                                                                                                                                                |                          CACTTTAACAACATTTTGCTCCACTTTTCCACGACCAAACAACTTGAAATCTGGTTAAAATAACACGCAACACTATTCTTCTTCCTTGAGTCCGCCCGGAACTCGAAAAACAAACCGAGTTAAAGCCATTTTTCACAAAATCGATTTTGGGTCTCACCAAAATTACGGG  >  NC_000913/1633336‑1633504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.