| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2590715 = | 12 (0.400) | 5 (0.190) | 5/198 | 2.5 | 25.8% | intergenic (+7/+92) | acrD/ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| ? | NC_000913 | 2590747 = | 18 (0.670) | intergenic (+39/+60) | acrD/ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein | |||||
ATGGGCGGGATGATTTCGGCCACTATTCTGGCTATTTACTTCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAA > NC_000913/2590607‑2590833 | aTGGGCGGGATGATTTCGGCCACTATTCTGGCTATTTACTTCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGc < 1:52865/116‑1 (MQ=255)aTGGGCGGGATGATTTCGGCCACTATTCTGGCTATTTACTTCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGc > 2:52865/1‑116 (MQ=255) gatgatTTCGGCCACTATTCTGGCTATTTACTTCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAg > 2:23213/1‑148 (MQ=255) tggaaagactttatcgaagttatgcttcgtaagtaattcctgagacaaagtacaaacagcaagaacccgctgagcaggttcttaatcggaaagttgAAAAAGGCGACATGc > 8:76605‑M1/97‑111 (MQ=255) tttatcgaagttatgcttcgtaagtaattcctgagacaaagtacaaacagcaagaacccgctgagcaggttcttaatcggaaagttgAAAAAGGCGAc > 7:40237‑M1/88‑98 (MQ=255) tttatcgaagttatgcttcgtaagtaattcctgagacaaagtacaaacagcaagaacccgctgagcaggttcttaatcggaaagttgAAAAAGGCGAc < 8:40237‑M1/11‑1 (MQ=255) tttACTTCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAAc < 3:86766/125‑1 (MQ=255) tttACTTCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAAc > 4:86766/1‑125 (MQ=255) ttCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTc > 3:104305/1‑102 (MQ=255) ttCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTc < 4:104305/102‑1 (MQ=255) cctgagacaaagtacaaacagcaagaacccgctgagcaggttcttaatcggaaagttgAAAAAGGCGACATGCCAATGTGTCGCCTTTTTc > 3:104469‑M1/59‑91 (MQ=255) cctgagacaaagtacaaacagcaagaacccgctgagcaggttcttaatcggaaagttgAAAAAGGCGACATGCCAATGTGTCGCCTTTTTc < 4:104469‑M1/33‑1 (MQ=255) ccgccgcTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATaa < 1:23213/149‑1 (MQ=255) ccgcTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAACCt < 7:61172/90‑1 (MQ=255) ccgcTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAACCt > 8:61172/1‑90 (MQ=255) caagaacccgctgagcaggttcttaatcggaaagttgAAAAAGGCGACATGCCAATGTGTCGCCtttt > 5:6186‑M1/38‑68 (MQ=255) caagaacccgctgagcaggttcttaatcggaaagttgAAAAAGGCGACATGCCAATGTGTCGCCtttt < 6:6186‑M1/31‑1 (MQ=255) agcgggAAGCGGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATaaa < 5:14783/144‑1 (MQ=255) cAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACttt > 4:29809/1‑87 (MQ=255) | ATGGGCGGGATGATTTCGGCCACTATTCTGGCTATTTACTTCGTGCCGCTGTTCTTTGTGCTGGTGCGCCGCCGCTTCCCGCTGAAGCCGCGCCCGGAATAAGCAATAAAAAAGGCGACATGCCAATGTGTCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAA > NC_000913/2590607‑2590833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |