| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225468 = | 2 (0.070) | 9 (0.330) | 11/204 | 1.3 | 83.0% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
CGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGA > NC_000913/225324‑225608 | tctgaagtattttttatttaatcactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCaaa < 1:37527‑M1/5‑1 (MQ=255) tatttaaccactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgcacgGCAAATTTGAAGAGGttt > 2:159016‑M1/131‑148 (MQ=255) tacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgcacgGCAAATTTGAaga < 6:171841‑M1/13‑1 (MQ=255) tacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgcacgGCAAATTTGAaga > 5:171841‑M1/120‑132 (MQ=255) gtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctctttaaatttgcacgGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCta < 8:39429‑M1/39‑1 (MQ=255) gagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtg < 1:13676‑M1/1‑1 (MQ=255) gagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtg > 2:13676‑M1/107‑107 (MQ=255) ggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctctttaaatttgcacgGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGga > 7:39429‑M1/97‑149 (MQ=255) tgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAAttt < 5:40395‑M1/8‑1 (MQ=255) tgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAAttt > 6:40395‑M1/73‑80 (MQ=255) aaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgcacgGCAAAttt > 2:45643‑M1/70‑77 (MQ=255) aaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgcacgGCAAAttt < 1:45643‑M1/8‑1 (MQ=255) gcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgcacgGCAAATTTGAAGAGGTTTTAACTACATGTTATg > 8:71365‑M1/67‑99 (MQ=255) gcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgcacgGCAAATTTGAAGAGGTTTTAACTACATGTTATg < 7:71365‑M1/33‑1 (MQ=255) tctcccagctgagctatagccccataacatgtagttaaaacctctccaaatttgcacgGCAAATTTGAAGAGGtt > 7:31267‑M1/59‑75 (MQ=255) tctcccagctgagctatagccccataacatgtagttaaaacctctccaaatttgcacgGCAAATTTGAAGAGGtt < 8:31267‑M1/17‑1 (MQ=255) tACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATa > 8:74427/1‑149 (MQ=32) tttGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCaga < 7:74427/149‑1 (MQ=32) GCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATa < 6:82507‑M1/99‑1 (MQ=255) GCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATa > 5:82507‑M1/1‑99 (MQ=255) GCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACtt > 8:101557‑M1/1‑137 (MQ=255) GCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACtt < 7:101557‑M1/137‑1 (MQ=255) | CGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGA > NC_000913/225324‑225608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |