New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1484129 =31 (1.030)4 (0.140) 4/204 2.9 12.6% coding (1069/3903 nt) hrpA putative ATP‑dependent helicase
?NC_000913 1484164 = 27 (0.980)coding (1104/3903 nt) hrpA putative ATP‑dependent helicase
Rejected: Frequency below/above cutoff threshold.

CGATGCGCTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGT  >  NC_000913/1483981‑1484268
                                                                                                                                                    |                                                                                                                                           
gaaatcgtcttcggaatagagacgaatacagatcccttcggacacacgaccacagcggcctttacgctgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctg                                                                                                                                             <  1:150638‑M1/1‑1 (MQ=255)
  aatcgtcttcggaatagagacgaatacagatcccttcggacacacgaccacagcggcctttacgctgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgctatagctgtagcggctgatacgcgctGTa                                                                                                                                           <  7:23505‑M1/3‑1 (MQ=255)
      gtcttcggaatagagacgaatacagatcccttcggacacacgaccacagcggcctttacgctgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCg                                                                                                                                        >  2:115506‑M1/143‑148 (MQ=255)
      gcTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCgg                                                                                                                                       <  8:11085/149‑1 (MQ=255)
      gcTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCgg                                                                                                                                       <  8:137834/149‑1 (MQ=255)
                    aCTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTa                                                                                                                        <  4:30062/149‑1 (MQ=255)
                                      tCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATAc                                                                                                                            <  1:94367/128‑1 (MQ=255)
                                      tCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATAc                                                                                                                            >  2:94367/1‑128 (MQ=255)
                                                                 gctgattggcagacgcctgggaaatcggctcaatcgacaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGt                                                                                                             >  1:17006‑M1/84‑116 (MQ=255)
                                                                 gctgattggcagacgcctgggaaatcggctcaatcgacaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGt                                                                                                             <  2:17006‑M1/33‑1 (MQ=255)
                                                                   tgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGTACAgc                                                                                                        >  1:109552‑M1/82‑119 (MQ=255)
                                                                   tgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGTACAgc                                                                                                        <  2:109552‑M1/38‑1 (MQ=255)
                                                                    gCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCaaa                                                                         <  1:141495/149‑1 (MQ=255)
                                                                    gCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCa                                                                           >  2:141495/1‑147 (MQ=255)
                                                                            aaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAg                                                                        >  2:47018/1‑142 (MQ=255)
                                                                            aaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAg                                                                        <  1:47018/142‑1 (MQ=255)
                                                                                                        ggCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCg                                     >  6:108874/1‑149 (MQ=255)
                                                                                                                     ggCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa                                         >  8:141521/1‑132 (MQ=255)
                                                                                                                     ggCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa                                         <  7:141521/132‑1 (MQ=255)
                                                                                                                          ccAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc                                                           <  3:94411/109‑1 (MQ=255)
                                                                                                                          ccAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc                                                           <  3:96462/109‑1 (MQ=255)
                                                                                                                          ccAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc                                                           >  4:96462/1‑109 (MQ=255)
                                                                                                                          ccAACGTCGCGGAAACGTCGCTCACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc                                                           >  4:94411/1‑109 (MQ=255)
                                                                                                                           cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa                                         <  6:70113/126‑1 (MQ=255)
                                                                                                                           cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa                                         >  5:70113/1‑126 (MQ=255)
                                                                                                                           cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAg                  >  8:23505/1‑149 (MQ=255)
                                                                                                                             aCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGc                        <  2:158469/141‑1 (MQ=255)
                                                                                                                             aCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGc                        >  1:158469/1‑141 (MQ=255)
                                                                                                                               gTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATAGACCCCGGTACAGAGAGTATCAGCAGCTACAGCTATCGCAACAAAGTGCAGCTTTTTCCGATTGAGCCGAGTTCACAGGCGTCTGCCAATCAGCGTAAAGGcag              >  4:103589/1‑147 (MQ=255)
                                                                                                                                    ggAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAcc                                                                                                                  >  4:82119/1‑44 (MQ=255)
                                                                                                                                    ggAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAcc                                                                                                                  <  3:82119/44‑1 (MQ=255)
                                                                                                                                    ggAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCtgtg         >  6:137970/1‑149 (MQ=255)
                                                                                                                                         cGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCgt    <  5:108874/149‑1 (MQ=255)
                                                                                                                                          gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTg                                                      <  5:5507/98‑1 (MQ=255)
                                                                                                                                          gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTg                                                      >  6:5507/1‑98 (MQ=255)
                                                                                                                                           tCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCgtgt  <  3:103589/149‑1 (MQ=255)
                                                                                                                                                  ccGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa                                         <  4:101051/103‑1 (MQ=255)
                                                                                                                                                  ccGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa                                         >  3:101051/1‑103 (MQ=255)
                                                                                                                                                    |                                                                                                                                           
CGATGCGCTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGT  >  NC_000913/1483981‑1484268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.