New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1220754 =39 (1.300)6 (0.210) 6/210 2.4 14.6% pseudogene (1154/2574 nt) ycgH pseudogene; putative ATP‑binding component of a transport system
?NC_000913 1220775 = 33 (1.160)pseudogene (1175/2574 nt) ycgH pseudogene; putative ATP‑binding component of a transport system
Rejected: Frequency below/above cutoff threshold.

CTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAAC  >  NC_000913/1220645‑1220901
                                                                                                                                  |                                                                                                                              
cTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAAt                                                                                                              >  8:63684/1‑149 (MQ=255)
       gAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGaa                                                                                                        <  7:63684/148‑1 (MQ=255)
                tCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACaa                                                                                                               <  8:47415/132‑1 (MQ=255)
                 cacaCCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGaaa                                                                                                 >  4:88550/1‑145 (MQ=255)
                 cacaCCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGaaa                                                                                                 <  3:88550/145‑1 (MQ=255)
                            ataatGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCttt                                                                                                                           <  1:49968/108‑1 (MQ=255)
                            ataatGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCttt                                                                                                                           >  2:49968/1‑108 (MQ=255)
                             attgataatactgtctgaattagtcagatgggtaacaacggagtcatctttcatattccagattgtattttctgaaagctTCAGCGGCACAACCACGCTGAAGCTTTc                                                                                                                          <  3:25718‑M1/28‑1 (MQ=255)
                             attgataatactgtctgaattagtcagatgggtaacaacggagtcatctttcatattccagattgtattttctgaaagctTCAGCGGCACAACCACGCTGAAGCTTTc                                                                                                                          >  4:25718‑M1/81‑108 (MQ=255)
                                             gaattagtcagatgggtaacaacggagtcatctttcatattccagattgtattttctgaaagctTCAGCGGCACAACCACGCTGAAGCTTTCa                                                                                                                         <  4:53916‑M1/29‑1 (MQ=255)
                                             gaattagtcagatgggtaacaacggagtcatctttcatattccagattgtattttctgaaagctTCAGCGGCACAACCACGCTGAAGCTTTCa                                                                                                                         >  3:53916‑M1/65‑93 (MQ=255)
                                                      ggTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTAc                                                                                <  1:61079/125‑1 (MQ=255)
                                                      ggTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTAc                                                                                >  2:61079/1‑125 (MQ=255)
                                                         gACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTg                                                                                                           >  3:43894/1‑95 (MQ=255)
                                                         gACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTg                                                                                                           <  4:43894/95‑1 (MQ=255)
                                                            ttAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCAt                                                                            <  6:120552/123‑1 (MQ=255)
                                                            ttAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCAt                                                                            >  5:120552/1‑123 (MQ=255)
                                                            ttAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCaa                                                  >  3:2584/1‑149 (MQ=255)
                                                              aaaCATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGAt                                                                                              <  6:17023/103‑1 (MQ=255)
                                                              aaaCATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGAt                                                                                              >  5:17023/1‑103 (MQ=255)
                                                              aaaCATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAAt                                                 <  4:2584/148‑1 (MQ=255)
                                                                          gTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGa                                                              <  8:101187/123‑1 (MQ=255)
                                                                          gTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGa                                                              >  7:101187/1‑123 (MQ=255)
                                                                                   tATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCAGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCaaa                           >  3:138560/1‑149 (MQ=255)
                                                                                          aaTGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACa                                                            >  8:129328/1‑109 (MQ=255)
                                                                                          aaTGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACa                                                            <  7:129328/109‑1 (MQ=255)
                                                                                           aTGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTAcc                   >  5:43301/1‑149 (MQ=255)
                                                                                                     tgaaagcttcagcgtggttgtgccgctgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTc                                                                 <  4:53916‑M2/64‑1 (MQ=255)
                                                                                                     tgaaagcttcagcgtggttgtgccgctgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTc                                                                 >  3:53916‑M2/30‑93 (MQ=255)
                                                                                                     tAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGtatt                                                       <  7:88925/103‑1 (MQ=255)
                                                                                                     tAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGtatt                                                       >  8:88925/1‑103 (MQ=255)
                                                                                                      gaaagcttcagcgtggttgtgccgctgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAAt                                                 >  4:25718‑M2/29‑108 (MQ=255)
                                                                                                      gaaagcttcagcgtggttgtgccgctgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAAt                                                 <  3:25718‑M2/80‑1 (MQ=255)
                                                                                                       aaCTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTc                                                                 >  6:103518/1‑91 (MQ=255)
                                                                                                       aaCTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTc                                                                 <  5:103518/91‑1 (MQ=255)
                                                                                                       aaCTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGtat                                                        >  3:150465/1‑100 (MQ=255)
                                                                                                       aaCTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGtat                                                        <  4:150465/100‑1 (MQ=255)
                                                                                                       aaCTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACa       >  5:61962/1‑149 (MQ=255)
                                                                                                            gTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCATTCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAAc  <  6:43301/149‑1 (MQ=255)
                                                                                                                gcgtggttgtgccgctgaAGCTTTCAGAAAATACAATCTg                                                                                                           >  2:65915‑M2/19‑40 (MQ=255)
                                                                                                                gcgtggttgtgccgctgaAGCTTTCAGAAAATACAATCTg                                                                                                           <  1:65915‑M2/22‑1 (MQ=255)
                                                                                                                   gCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTACCCaa                <  6:12041/128‑1 (MQ=255)
                                                                                                                   gCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTACCCaa                >  5:12041/1‑128 (MQ=255)
                                                                                                                               tgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACa                                                            >  7:81094‑M2/4‑72 (MQ=255)
                                                                                                                               tgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACa                                                            <  8:81094‑M2/69‑1 (MQ=255)
                                                                                                                                  |                                                                                                                              
CTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAAC  >  NC_000913/1220645‑1220901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.