Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,207,9360G.36.4% 18.2 / 11.2 11coding (436/630 nt)stfPe14 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (6/1);  new base . (2/2);  total (8/3)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01
Rejected as consensus: Frequency below/above cutoff threshold.

GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAG  >  NC_000913/1207798‑1208035
                                                                                                                                          |                                                                                                   
GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATg                                                                                            >  2:87568‑M1/1‑148 (MQ=255)
                                    ttAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGc                                                                   >  5:89837/1‑137 (MQ=255)
                                                             taCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg                                                                                                 >  1:56623/1‑82 (MQ=255)
                                                             taCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg                                                                                                 <  2:56623/82‑1 (MQ=255)
                                                                  gTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg                                                                                                   <  3:107206/75‑1 (MQ=255)
                                                                  gTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg                                                                                                   >  4:107206/1‑75 (MQ=255)
                                                                             tggtATTGAGCAATCAGCAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGc                                                       >  5:153810/1‑108 (MQ=255)
                                                                                tATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCtgtg                                                  >  3:103931/1‑110 (MQ=255)
                                                                                tATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGAAAATTATGCCAATGTCAGCGCACCTa           >  1:17374/1‑149 (MQ=255)
                                                                                                                                aTCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCt                                                     >  5:138891/1‑58 (MQ=255)
                                                                                                                                aTCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCt                                                     <  6:138891/58‑1 (MQ=255)
                                                                                                                                aTCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAg  >  7:149040/1‑109 (MQ=255)
                                                                                                                                aTCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAg  <  8:149040/109‑1 (MQ=255)
                                                                                                                                    gCCTCTGGGGGGGATTGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTa           <  7:66362/97‑1 (MQ=255)
                                                                                                                                    gCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTa           >  8:66362/1‑97 (MQ=255)
                                                                                                                                          |                                                                                                   
GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAG  >  NC_000913/1207798‑1208035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: