Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,559,357 Δ1,629 bp [rtcR][glpG] [rtcR], glpR, glpR, [glpG]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3559357 3560985 1629 42 [0] [0] 42 [rtcR]–[glpG] [rtcR],glpR,glpR,[glpG]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35593560 (0.000)42 (1.260) 39/238 0.1 100% coding (1089/1599 nt) rtcR sigma 54‑dependent transcriptional regulator of rtcBA expression
?NC_000913 3560986 = 0 (0.000)coding (467/831 nt) glpG rhomboid intramembrane serine protease

AGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGCGCCAGGAAGATATTGAACCGAACCTGGATTATGAAGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCG  >  NC_000913/3559223‑3559493
                                                                                                                                     |                                                                                                                                         
aGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagagg                                                                                                                            <  1:71911‑M1/149‑16 (MQ=255)
          tGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcag                                                                                                                                      >  8:93757‑M1/1‑124 (MQ=255)
          tGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcag                                                                                                                                      <  7:93757‑M1/129‑6 (MQ=255)
            aTTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagc                                                                                                                >  5:111028‑M1/1‑122 (MQ=255)
            aTTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatat                                                                                                                        <  7:89127‑M1/141‑20 (MQ=255)
            aTTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatat                                                                                                                        >  8:89127‑M1/1‑122 (MQ=255)
                tCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgag                                                                                                             >  8:24847‑M1/1‑118 (MQ=255)
                   gCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagt                                                                                                         <  6:111028‑M1/149‑35 (MQ=255)
                     ttATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtg                                                                                                        >  4:73280‑M1/1‑113 (MQ=255)
                        tCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcagg                                                                                                                                     <  8:24962‑M1/116‑7 (MQ=255)
                        tCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcagg                                                                                                                                     >  7:24962‑M1/1‑110 (MQ=255)
                           ccGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaac                                                                                                 >  3:113821‑M1/1‑107 (MQ=255)
                                aCGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtg                                                                                            <  8:102840‑M1/149‑48 (MQ=255)
                                 cGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgg                                                                                           <  2:172794‑M1/149‑49 (MQ=255)
                                  ggTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtggg                                                                                          >  5:40780‑M1/1‑100 (MQ=255)
                                      cgcgATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaa                                                                                      <  7:24847‑M1/149‑54 (MQ=255)
                                                 ccAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggtt                                                                                                                                   >  5:147939‑M1/1‑85 (MQ=255)
                                                 ccAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggtt                                                                                                                                   <  6:147939‑M1/93‑9 (MQ=255)
                                                             cGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaag                                                                                     >  2:165515‑M1/1‑73 (MQ=255)
                                                             cGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaag                                                                                     <  1:165515‑M1/127‑55 (MQ=255)
                                                                       tttCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatc                                                     <  5:65584‑M1/149‑87 (MQ=255)
                                                                           gcgAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgc                                                                               >  5:170246‑M1/1‑59 (MQ=255)
                                                                           gcgAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgc                                                                               <  6:170246‑M1/119‑61 (MQ=255)
                                                                            cgAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaat                                                 <  4:585‑M1/148‑91 (MQ=255)
                                                                            cgAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaat                                                 >  3:585‑M1/1‑58 (MQ=255)
                                                                             gAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatgg                                               <  6:40780‑M1/149‑93 (MQ=255)
                                                                              aaGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggc                                              <  3:73280‑M1/149‑94 (MQ=255)
                                                                                      tACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaa                                                                                      <  1:40936‑M1/101‑54 (MQ=255)
                                                                                      tACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaa                                                                                      >  2:40936‑M1/1‑48 (MQ=255)
                                                                                                             cTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgc               >  8:148740‑M1/1‑25 (MQ=255)
                                                                                                              ttCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgtt                                                          <  7:142988‑M1/105‑82 (MQ=255)
                                                                                                              ttCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgtt                                                          >  8:142988‑M1/1‑24 (MQ=255)
                                                                                                              ttCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttca                                                               <  4:108975‑M1/100‑77 (MQ=255)
                                                                                                              ttCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttca                                                               >  3:108975‑M1/1‑24 (MQ=255)
                                                                                                                cACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgcc              <  4:113821‑M1/147‑126 (MQ=255)
                                                                                                                   ccTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaa                                                                          >  3:71686‑M1/1‑19 (MQ=255)
                                                                                                                   ccTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaa                                                                          <  4:71686‑M1/84‑66 (MQ=255)
                                                                                                                     tGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaatt       >  2:16583‑M1/1‑17 (MQ=255)
                                                                                                                       ccGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaatt       <  1:16583‑M1/147‑133 (MQ=255)
                                                                                                                          ggTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaatttgcat  >  7:147307‑M1/1‑12 (MQ=255)
                                                                                                                              tACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgat                  <  1:69329‑M1/129‑122 (MQ=255)
                                                                                                                              tACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgat                  >  2:69329‑M1/1‑8 (MQ=255)
                                                                                                                                     |                                                                                                                                         
AGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGCGCCAGGAAGATATTGAACCGAACCTGGATTATGAAGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCG  >  NC_000913/3559223‑3559493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: