New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2077195	47 (0.640)	3 (0.040)	3/258	NT	6.1%	coding (84/369 nt)	cbeA	CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin
	?	NC_000913	= 2077202	46 (0.650)					coding (91/369 nt)	cbeA	CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin

AGCAGAATTATCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCAC  >  NC_000913/2077054‑2077344                                                                                                                                                     |                                                                                                                                               atcAGAATTATCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACCCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCg                                                                                                                                                >  5:97501/3‑149 (MQ=255) aGCAGAATTATCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCg                                                                                                                                                <  1:184015/149‑1 (MQ=255)  gCAGAATTATCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGg                                                                                                                                               <  2:176827‑M2/149‑2 (MQ=255)   cAGAATTATCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGgg                                                                                                                                              <  4:111023‑M2/149‑3 (MQ=255)     gAATTATCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGgggc                                                                                                                                            >  4:47426‑M2/1‑145 (MQ=255)           tCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCt                                                                                                                                      >  1:308709/1‑149 (MQ=255)             gCCACTCCCCGCCCATTCTAAGCCGATTTGCTGAACCGATTTTATCGTGGCAGCCACACTCCCCCGGCCAACACTTCCCGACGACAATCTCGACCCCCCCTGGGGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTgg                                                                                                                                    <  3:35647/149‑1 (MQ=255)                      ggACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggagg                                                                                                                           <  6:263832/149‑1 (MQ=255)                      ggACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggagg                                                                                                                           <  3:67007/149‑1 (MQ=255)                      ggACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggagg                                                                                                                           <  3:111023/149‑1 (MQ=255)                        aCCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAggg                                                                                                                          >  1:273069/1‑148 (MQ=255)                           aTTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCAGGTGCAGGAGGGTAAc                                                                                                                      >  2:229023/1‑149 (MQ=255)                               ttAGCCGATTTTCTGTAAGGAGTTTATCGTGTCAGCCACCCTCCCCGGGACAACACTTCCCGCCGACAATCCCGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTCACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGt                                                                                                                  >  4:216434/1‑149 (MQ=255)                                   ccGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGg                                                                                                                                               <  6:296033‑M2/116‑2 (MQ=255)                                   ccGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGg                                                                                                                                               >  5:296033‑M2/1‑115 (MQ=255)                                    cGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCAt                                                                                                             >  5:68451/1‑149 (MQ=255)                                      aTTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTa                                                                                                           <  1:13518/149‑1 (MQ=255)                                              tAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTg                                                                                                      <  6:97501/146‑1 (MQ=255)                                              tAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCg                                                                                                   >  1:275163/1‑149 (MQ=255)                                                aGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGAc                                                                                                 >  6:12169/1‑149 (MQ=255)                                                aGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGAc                                                                                                 <  2:124274/149‑1 (MQ=255)                                                aGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGGGCAGGAGGGTAACCGGTTGCATTACCTTGCCGAc                                                                                                 >  5:70110/1‑149 (MQ=255)                                                aGGAGTTTATCGTGTCATACACACTCCCCGGGACAACACTTCCCGAAGCCCACCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGGTGCATTACCTTGCCGAc                                                                                                 <  2:249197/149‑1 (MQ=255)                                                 ggATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGCCGCCCTGGTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGAcc                                                                                                >  2:274890/1‑149 (MQ=255)                                                         tCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCgg                                                                                         <  2:273069/148‑1 (MQ=255)                                                              tCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCa                                                                                    <  8:320900/148‑1 (MQ=255)                                                                  acacacTCCCCCGGACAACCCTTCCCGTCGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGGGACGCCCTGGTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGc                                                                               <  2:308709/149‑1 (MQ=255)                                                                    acacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCt                                                                             <  1:334928/149‑1 (MQ=255)                                                                     cacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGACCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTg                                                                            >  8:183194/1‑149 (MQ=255)                                                                          cccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCa                                                                        <  4:279773/148‑1 (MQ=255)                                                                          cccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCAGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCa                                                                        <  1:229023/148‑1 (MQ=255)                                                                           ccGGGACAACACTTCCCGCCGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTCTTTCGGGGCACGCCTGGAGCAGGAGGGTAACCGGTAGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGATCAGc                                                                      >  5:242557/1‑149 (MQ=255)                                                                                acaacaCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGc                                                                 <  6:188526/149‑1 (MQ=255)                                                                                acaacaCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGc                                                                 <  1:137616/149‑1 (MQ=255)                                                                                acaacaCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTACATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATg                                                                  >  1:209060/1‑148 (MQ=255)                                                                                   acacTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGa                                                              <  5:12169/149‑1 (MQ=255)                                                                                    cacTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGAt                                                             <  8:231985/149‑1 (MQ=255)                                                                                      cTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGc                                                           <  6:70110/149‑1 (MQ=255)                                                                                         cccGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGt                                                         <  2:275163/148‑1 (MQ=255)                                                                                          ccGACGACAATCACGACCGCTCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTac                                                       <  4:115112/149‑1 (MQ=255)                                                                                          ccGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTac                                                       <  7:266832/149‑1 (MQ=255)                                                                                               gacAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCt                                                  >  7:65140/1‑149 (MQ=255)                                                                                               gacAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTACATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCt                                                  <  2:209060/149‑1 (MQ=255)                                                                                                acAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTg                                                 <  1:176827/149‑1 (MQ=255)                                                                                                  aaTCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGa                                               >  3:284735/1‑149 (MQ=255)                                                                                                    tCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGAcc                                             >  8:65949/1‑149 (MQ=255)                                                                                                          ccGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCt                                       <  4:284735/149‑1 (MQ=255)                                                                                                            gCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATCCAGATGCGTACCACCTGGACCAGGCCttt                                     <  4:4372/149‑1 (MQ=255)                                                                                                                cTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCgc                                 >  5:56038/1‑149 (MQ=255)                                                                                                                              ccTGCACCGTGACGCCCTGTTTCTGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAaacaa                   >  7:96597/1‑149 (MQ=255)                                                                                                                                  cACCGTGACGCCCTGTTTCGgggcacgtctggtgcagggcagcccccaccaggggcggtcgtgattgtcgtcgggaagtgttgtcccggggagtgtgtctgacacgataaaatccttacagaaaatcggctaagaatggtccggtagtg               <  3:288236‑M2/149‑130 (MQ=255)                                                                                                                                  cACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACAGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTg                >  5:75541/1‑148 (MQ=255)                                                                                                                                     cGTGACGCCCTGTTTCGgggcgtcacggtgcagggcagcccccaccaggggcggtcgtgattgtcgtc                                                                                             >  4:194650‑M2/1‑17 (MQ=255)                                                                                                                                     cGTGACGCCCTGTTTCGgggcgtcacggtgcagggcagcccccaccaggggcggtcgtgattgtcgtc                                                                                             <  3:194650‑M2/68‑52 (MQ=255)                                                                                                                                     cGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAAc            <  1:274890/149‑1 (MQ=255)                                                                                                                                               tGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCAc  >  6:273884/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               AGCAGAATTATCGCCACTACCGGACCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCAC  >  NC_000913/2077054‑2077344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.