Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 3,559,357 Δ1,629 bp 100% [rtcR][glpG] [rtcR], glpR, glpR, [glpG]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3559357 3560985 1629 102 [0] [1] 103 [rtcR]–[glpG] [rtcR],glpR,glpR,[glpG]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35593560 (0.000)93 (1.310) 75/258 NT 99.5% coding (1089/1599 nt) rtcR sigma 54‑dependent transcriptional regulator of rtcBA expression
?NC_000913 3560986 = 1 (0.010)coding (467/831 nt) glpG rhomboid intramembrane serine protease

Only 100 of 103 total aligned reads displayed.

ACACCACGCCAGAAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAACA  >  NC_000913/3560840‑3561133
                                                                                                                                                  |                                                                                                                                                   
gcagcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagag                                                                                                                                                    <  6:282775‑M2/2‑1 (MQ=255)
 cagcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagag                                                                                                                                                    >  8:136504‑M2/146‑147 (MQ=255)
     gatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGt                                                                                                                                               >  7:60836‑M2/142‑148 (MQ=255)
     gatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGt                                                                                                                                               >  7:41681‑M2/142‑148 (MQ=255)
      atcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGtt                                                                                                                                              >  7:302242‑M2/141‑148 (MQ=255)
         gccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTa                                                                                                                                             >  8:20311‑M2/138‑146 (MQ=255)
          ccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAaga                                                                                                                                         <  3:43568‑M2/13‑1 (MQ=255)
           caggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgcagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAagag                                                                                                                                        <  6:228520‑M2/14‑1 (MQ=255)
           caggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAagag                                                                                                                                        <  3:47167‑M2/14‑1 (MQ=255)
             ggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa                                                                                                                                      <  2:75421‑M2/16‑1 (MQ=255)
              gtgagcagtgattttcagcttatagccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa                                                                                                                                      >  8:17679‑M2/133‑148 (MQ=255)
               tgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGata                                                                                                                                    <  8:107251‑M2/18‑1 (MQ=255)
                 agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat                                                                                                                                   <  5:100677‑M2/19‑1 (MQ=255)
                 agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat                                                                                                                                   <  1:46163‑M2/19‑1 (MQ=255)
                  gcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGCGGATATGc                                                                                                                                 <  1:312430‑M2/21‑1 (MQ=255)
                  gcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa                                                                                                                                      <  6:196385‑M2/16‑1 (MQ=255)
                  gcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa                                                                                                                                      >  5:196385‑M2/129‑144 (MQ=255)
                     gtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccggatctacgccagAGCAGGTTAAAGAGGATATGCAt                                                                                                                               >  6:301893‑M2/126‑148 (MQ=255)
                      tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGc                                                                                                                                                   >  6:208556‑M2/125‑127 (MQ=255)
                      tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGc                                                                                                                                                   <  5:208556‑M2/3‑1 (MQ=255)
                      tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCAt                                                                                                                               >  3:37035‑M2/125‑147 (MQ=255)
                        attttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAg                                                                                                                            <  4:211820‑M2/26‑1 (MQ=255)
                         ttttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGc                                                                                                                           >  7:279230‑M2/122‑148 (MQ=255)
                              agcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGaa                                                                                                                      <  4:83890‑M2/32‑1 (MQ=255)
                               gcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGt                                                                                                                    >  7:208832‑M2/116‑149 (MQ=255)
                                 ttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTg                                                                                                                   >  4:220130‑M2/114‑148 (MQ=255)
                                   atcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCAt                                                                                                                >  8:305938‑M2/112‑149 (MQ=255)
                                      gccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTaa                                                                                                             >  7:249319‑M2/109‑149 (MQ=255)
                                      gccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgaacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATtac                                                                                                             >  4:123567‑M2/109‑148 (MQ=255)
                                          gaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat                                                                                                                                   >  4:144210‑M2/105‑123 (MQ=255)
                                          gaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat                                                                                                                                   <  3:144210‑M2/19‑1 (MQ=255)
                                           aacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGt                                                                                                        >  4:103190‑M2/104‑149 (MQ=255)
                                           aacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGt                                                                                                        >  4:120075‑M2/104‑149 (MQ=255)
                                             cggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg                                                                                                      <  2:240740‑M2/48‑1 (MQ=255)
                                                  cgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGa                                                                                                  <  7:17679‑M2/52‑1 (MQ=255)
                                                   gcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAg                                                                                                >  3:12595‑M2/96‑149 (MQ=255)
                                                    cgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGt                                                                                               <  3:3609‑M2/55‑1 (MQ=255)
                                                     gatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGt                                                                                               >  7:209592‑M2/94‑148 (MQ=255)
                                                       tttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAAc                                                                                            <  7:4607‑M2/58‑1 (MQ=255)
                                                       tttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAAc                                                                                            >  4:155255‑M2/92‑149 (MQ=255)
                                                               agctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATTTGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAAc                                                                                    <  1:9393‑M2/66‑1 (MQ=255)
                                                               aCAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACGACCAGAGGAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGaa                                                                                     <  2:15611/148‑1 (MQ=255)
                                                                    gttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg                                                                                                      >  8:307162‑M2/79‑126 (MQ=255)
                                                                    gttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCaa                                                                                <  5:57540‑M2/70‑1 (MQ=255)
                                                                        ccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTc                                                                           <  7:124076‑M2/75‑1 (MQ=255)
                                                                         cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCATGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa                                                                          <  5:93046‑M2/76‑1 (MQ=255)
                                                                         cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa                                                                          <  8:60836‑M2/76‑1 (MQ=255)
                                                                         cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa                                                                          <  3:155255‑M2/76‑1 (MQ=255)
                                                                           aaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTTAgt                                                                        <  4:12595‑M2/78‑1 (MQ=255)
                                                                           aaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCaga                                                                        <  1:143641‑M2/78‑2 (MQ=255)
                                                                            aggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtg                                                                       <  8:208832‑M2/79‑1 (MQ=255)
                                                                             ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtgt                                                                      <  8:209592‑M2/80‑1 (MQ=255)
                                                                             ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtgt                                                                      <  8:247725‑M2/80‑1 (MQ=255)
                                                                              gcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgtgtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGtt                                                                     <  1:218912‑M2/81‑1 (MQ=255)
                                                                              gcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGtt                                                                     <  1:234286‑M2/81‑1 (MQ=255)
                                                                               caaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATCTGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTg                                                                    <  7:305938‑M2/82‑1 (MQ=255)
                                                                               caaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTaa                                                                                             <  7:313232‑M2/57‑1 (MQ=255)
                                                                               caaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTaa                                                                                             >  8:313232‑M2/68‑124 (MQ=255)
                                                                                 aatttcgcgaagatctgtccgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGTGTAGTGCAGTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTAAGTGTTGGa                                                                  >  4:66275‑M2/66‑149 (MQ=255)
                                                                                  atttcgagaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGAt                                                                 <  5:301893‑M2/85‑1 (MQ=255)
                                                                                   tttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATc                                                                <  7:95164‑M2/86‑1 (MQ=255)
                                                                                       gcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGaa                                                             <  3:220130‑M2/89‑1 (MQ=255)
                                                                                       gcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGaa                                                             <  8:41681‑M2/89‑1 (MQ=255)
                                                                                        cgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATg                                                           >  4:106817‑M2/59‑149 (MQ=255)
                                                                                         gaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAATGAGGTTATGCATCAGCGAGAAGTGCATTAAAGGGTGGCTGAAGTAACGCAAGAACTCAAATTTCAGTGTTGGATCGAATgg                                                          >  2:304914‑M2/58‑149 (MQ=255)
                                                                                         gaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATgg                                                          >  3:1869‑M2/58‑149 (MQ=255)
                                                                                          aagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggc                                                         <  5:289209‑M2/93‑1 (MQ=255)
                                                                                           agatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggc                                                         >  1:33796‑M2/56‑148 (MQ=255)
                                                                                            gatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggcca                                                       <  3:277975‑M2/95‑1 (MQ=255)
                                                                                            gatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggcca                                                       <  4:27787‑M2/95‑1 (MQ=255)
                                                                                             atctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggccag                                                      >  5:45088‑M2/54‑149 (MQ=255)
                                                                                                  tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggccag                                                      <  1:29418‑M2/96‑1 (MQ=255)
                                                                                                  tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGgccaggccag                                                 >  5:30909‑M2/49‑149 (MQ=255)
                                                                                                     gcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGgccagcca                                              >  2:295062‑M2/46‑149 (MQ=255)
                                                                                                        cggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATaa                                           <  8:249319‑M2/107‑1 (MQ=255)
                                                                                                          gatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGa                                                                  >  3:128381‑M2/41‑124 (MQ=255)
                                                                                                          gatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGa                                                                  <  4:128381‑M2/84‑1 (MQ=255)
                                                                                                          gatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACa                                         <  1:295062‑M2/109‑1 (MQ=255)
                                                                                                           atcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACAt                                        <  1:119839‑M2/110‑1 (MQ=255)
                                                                                                             caatctctggaccttcatcctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCa                                      >  3:42049‑M2/38‑149 (MQ=255)
                                                                                                                  tctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTcc                                 >  7:211114‑M2/33‑149 (MQ=255)
                                                                                                                    tggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTc                                  <  3:106817‑M2/116‑1 (MQ=255)
                                                                                                                    tggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTc                                  <  6:45088‑M2/116‑1 (MQ=255)
                                                                                                                         cttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGc                          >  3:56818‑M2/26‑149 (MQ=255)
                                                                                                                              ccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCATATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCgaga                     <  8:279230‑M2/129‑1 (MQ=255)
                                                                                                                              ccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCgag                      >  4:130188‑M2/21‑148 (MQ=255)
                                                                                                                               cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGaa                    >  1:67539‑M2/20‑149 (MQ=255)
                                                                                                                               cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGaa                    >  6:174892‑M2/20‑149 (MQ=255)
                                                                                                                                    cgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGTAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCTGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGc               <  8:302242‑M2/135‑1 (MQ=255)
                                                                                                                                     gggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCa              <  4:37035‑M2/136‑1 (MQ=255)
                                                                                                                                     gggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCa              >  2:269761‑M2/14‑149 (MQ=255)
                                                                                                                                     gggtctaagccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTCGAACGAATGGAAAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCa              >  7:1961‑M2/14‑149 (MQ=255)
                                                                                                                                      ggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGCTCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCAt             >  2:98737‑M2/13‑149 (MQ=255)
                                                                                                                                        tctacgccagAGCAGGTTAAAGAGGATATTCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCTTATCATCACTTCCTGATCGCCGAGAATTTGCATgg           <  3:123567‑M2/139‑1 (MQ=255)
                                                                                                                                        tctacgccagAGCAGGTTAAAGAGGATATGCATCAGAGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATgg           >  5:117413‑M2/11‑149 (MQ=255)
                                                                                                                                          tacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGc          >  8:37305‑M2/9‑148 (MQ=255)
                                                                                                                                          tacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGc          >  4:228770‑M2/9‑148 (MQ=255)
                                                                                                                                            cgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTTCATTTACGCGTGGGTGAAGTTACGCCAGAACTCATATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATTGCaa        <  8:1961‑M2/142‑1 (MQ=255)
                                                                                                                                            cgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCaa        <  3:115197‑M2/142‑1 (MQ=255)
                                                                                                                                                 gAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAaca  <  7:136504‑M2/148‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
ACACCACGCCAGAAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAACA  >  NC_000913/3560840‑3561133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.