New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3950444 =	108 (1.030)	13 (0.130)	12/264	8.5	11.0%	intergenic (+24/‑63)	ilvL/ilvX	ilvG operon leader peptide/uncharacterized protein
	?	NC_000913	3950470 =	108 (1.080)					intergenic (+50/‑37)	ilvL/ilvX	ilvG operon leader peptide/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCGCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3950596‑3950444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTT  >  NC_000913/3950470‑3950617                                                                                                                                                                                                                                                                                                               CCCGCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGG                                                                                                                                                          >  8:406221/1‑149  CCGCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGG                                                                                                                                                         <  6:238104/149‑1   CGCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGGTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGG                                                                                                                                                        >  8:329796/1‑149   CGCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGG                                                                                                                                                        <  2:175619/149‑1   CGCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGGGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGG                                                                                                                                                        <  3:398856/149‑1    GCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGG                                                                                                                                                       >  8:149502/1‑149     CAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGCGCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGT                                                                                                                                                      <  1:460937/149‑1                                                                                                 CTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTAT                                                          >  6:353414/1‑149                                                                                                 CTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTAT                                                          <  5:353414/149‑1                                                                                                   CCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGG                                                                    <  1:360919/137‑1                                                                                                   CCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGG                                                                    >  2:360919/1‑137                                                                                                     TCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCA                                                                            >  8:153343/1‑127                                                                                                     TCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCA                                                                            <  7:153343/127‑1                                                                                                                       TCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGT                                        >  4:151254/1‑145                                                                                                                       TCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGT                                        <  3:151254/145‑1                                                                                                                                ACCCCCGGACCTTTCGGTGCGGGGGTCTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTG                           >  4:172572/1‑149                                                                                                                                  CCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACTGGGAACTACCTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCG                         >  2:268703/1‑149                                                                                                                                  CCCCGGACCTTTCGGTGCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCG                         >  5:256198/1‑149                                                                                                                                   ccaGGACCTTTTGGTGCGTGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCG                         <  4:57875/145‑1                                                                                                                                   CCCGGACCTTTCGGTGCGGGGGTTTATATTGACCTTAAAAACATAACCGAGGAGCAGACAATGCATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGAACATTGGGTTGAACATGAGTTGCG                         >  3:57875/1‑148                                                                                                                                                    GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACAC       <  2:329649/149‑1                                                                                                                                                     GGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACC      <  6:146456/149‑1                                                                                                                                                     GGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACC      >  8:261447/1‑149                                                                                                                                                     GGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACC      >  2:253181/1‑149                                                                                                                                                       GGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGT    >  3:288198/1‑149                                                                                                                                                         TTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTT  >  6:229698/1‑149                                                                                                                                                         TTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTT  >  2:288340/1‑149                                                                                                                                                         TTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTT  >  4:184010/1‑149                                                                                                                                                                                                                                                                                                               CCCGCAACGCATGTACCACCCACTGTGCGCCATTCATAGTTAGTTCCCCGTCCTGAATCTTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTTTTAAGGTCAAAAAAAACCCCCGGACCTTTCGGTGCGGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3950596‑3950444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTT  >  NC_000913/3950470‑3950617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.