Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,559,357 Δ1,629 bp [rtcR]–[glpG] [rtcR], glpR, glpR, [glpG]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3559357 3560985 1629 102 [1] [2] 104 [rtcR]–[glpG] [rtcR],glpR,glpR,[glpG]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35593561 (0.010)100 (0.980) 77/270 0.2 98.5% coding (1089/1599 nt) rtcR sigma 54‑dependent transcriptional regulator of rtcBA expression
?NC_000913 3560986 = 2 (0.020)coding (467/831 nt) glpG rhomboid intramembrane serine protease

Only 100 of 104 total aligned reads displayed.

TACACCACGCCAGAAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAACAC  >  NC_000913/3560839‑3561134
                                                                                                                                                   |                                                                                                                                                    
ggcagcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagag                                                                                                                                                     >  7:445147‑M2/148‑149 (MQ=255)
 gcagcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGc                                                                                                                                                    <  7:41431‑M2/3‑1 (MQ=255)
   agcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAg                                                                                                                                                  <  7:403583‑M2/5‑1 (MQ=255)
    gcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAgg                                                                                                                                                 <  5:10906‑M2/6‑1 (MQ=255)
      gatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGt                                                                                                                                                >  7:10278‑M2/142‑148 (MQ=255)
          gccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTaaa                                                                                                                                            <  5:447181‑M2/11‑1 (MQ=255)
          gccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTaaa                                                                                                                                            <  4:305893‑M2/11‑1 (MQ=255)
            caggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAagag                                                                                                                                         >  6:51319‑M2/136‑149 (MQ=255)
               gtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGat                                                                                                                                      <  1:364036‑M2/17‑1 (MQ=255)
                tgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGata                                                                                                                                     <  3:149886‑M2/18‑1 (MQ=255)
                 gagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat                                                                                                                                    >  1:91766‑M2/131‑149 (MQ=255)
                  agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat                                                                                                                                    <  7:92847‑M2/19‑1 (MQ=255)
                  agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATg                                                                                                                                   <  3:121290‑M2/20‑1 (MQ=255)
                  agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATg                                                                                                                                   >  4:389008‑M2/130‑149 (MQ=255)
                    cagtgattttaagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCa                                                                                                                                 >  5:66063‑M2/128‑149 (MQ=255)
                      gtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCAt                                                                                                                                >  6:82597‑M2/126‑148 (MQ=255)
                      gtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCAt                                                                                                                                >  1:371432‑M2/126‑148 (MQ=255)
                       tgattttccgcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCAt                                                                                                                                >  3:420955‑M2/125‑147 (MQ=255)
                       tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCAt                                                                                                                                >  7:28039‑M2/125‑147 (MQ=255)
                       tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCa                                                                                                                              <  8:23674‑M2/25‑1 (MQ=255)
                           tttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGata                                                                                                                                     <  8:252063‑M2/18‑1 (MQ=255)
                           tttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGata                                                                                                                                     >  7:252063‑M2/121‑138 (MQ=255)
                           tttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGata                                                                                                                                     <  8:245342‑M2/18‑1 (MQ=255)
                           tttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGc                                                                                                                            >  5:18072‑M2/121‑147 (MQ=255)
                               agcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGaa                                                                                                                       <  3:389008‑M2/32‑1 (MQ=255)
                               agcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGaa                                                                                                                       <  8:204302‑M2/32‑1 (MQ=255)
                               agcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGaa                                                                                                                       <  2:367879‑M2/32‑1 (MQ=255)
                               agcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAg                                                                                                                      >  6:310995‑M2/117‑149 (MQ=255)
                               agcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagagctgtacgcgcggatcaatctctggaccttcaccctgccggggctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAg                                                                                                                      <  6:6470‑M2/33‑1 (MQ=255)
                                 cttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTg                                                                                                                    >  5:339675‑M2/115‑149 (MQ=255)
                                  ttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcactctctggaccttcacccagccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTg                                                                                                                    >  6:100244‑M2/114‑148 (MQ=255)
                                       gccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAgg                                                                                                                                        >  4:351006‑M2/109‑123 (MQ=255)
                                        ccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAAc                                                                                                             >  3:144637‑M2/108‑149 (MQ=255)
                                              cggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg                                                                                                       <  6:66063‑M2/48‑1 (MQ=255)
                                               ctgcACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg                                                                                                       >  8:189332/1‑148 (MQ=255)
                                               ctgcACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg                                                                                                       <  7:189332/148‑1 (MQ=255)
                                                 tgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGt                                                                                                         >  4:32456‑M2/99‑144 (MQ=255)
                                                 tgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGt                                                                                                     >  2:252701‑M2/99‑148 (MQ=255)
                                                   cgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTg                                                                                                    >  7:125484‑M2/97‑147 (MQ=255)
                                                     cgatttgcgccagctggttgccgaaggcaaatttcgcgaagatgtgtacgcgcggatcaatctctggaccttcaccctgcggggtctactcctgAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGt                                                                                                <  5:100244‑M2/55‑1 (MQ=255)
                                                           gcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGc                                                                                           <  2:371432‑M2/60‑1 (MQ=255)
                                                           gcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGc                                                                                           <  5:328385‑M2/60‑1 (MQ=255)
                                                            cgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCa                                                                                         <  6:26440‑M2/62‑1 (MQ=255)
                                                             gccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGc                                                                                           >  4:165319‑M2/87‑146 (MQ=255)
                                                               cagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGaa                                                                                      <  3:374017‑M2/65‑1 (MQ=255)
                                                               cagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGaa                                                                                      >  4:217933‑M2/85‑149 (MQ=255)
                                                                agctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAAc                                                                                     >  2:302218‑M2/84‑149 (MQ=255)
                                                                agctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAAc                                                                                     <  5:82597‑M2/66‑1 (MQ=255)
                                                                     gttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTaa                                                                                                              <  5:211812‑M2/41‑1 (MQ=255)
                                                                     gttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTaa                                                                                                              >  6:211812‑M2/79‑119 (MQ=255)
                                                                     gttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCaaa                                                                                >  1:296907‑M2/79‑149 (MQ=255)
                                                                         ccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGATAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTc                                                                            <  7:88222‑M2/75‑1 (MQ=255)
                                                                          cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGGAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa                                                                           <  1:302218‑M2/76‑1 (MQ=255)
                                                                           gaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAg                                                                          >  5:394600‑M2/73‑149 (MQ=255)
                                                                              ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtgt                                                                       >  4:162030‑M2/70‑149 (MQ=255)
                                                                                caaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCATCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTg                                                                     >  1:175699‑M2/68‑149 (MQ=255)
                                                                                 aaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGc                                                                                                                                  <  7:435649‑M2/21‑1 (MQ=255)
                                                                                 aaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGc                                                                                                                                  >  8:435649‑M2/67‑87 (MQ=255)
                                                                                 aaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTg                                                                     >  4:243209‑M2/67‑148 (MQ=255)
                                                                                    tttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGGAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATc                                                                 <  3:165319‑M2/86‑1 (MQ=255)
                                                                                    tttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATc                                                                 <  8:445147‑M2/86‑1 (MQ=255)
                                                                                    tttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATc                                                                 <  2:236294‑M2/86‑1 (MQ=255)
                                                                                         cgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATg                                                            <  5:61362‑M2/91‑1 (MQ=255)
                                                                                           aagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggc                                                          <  3:162030‑M2/93‑1 (MQ=255)
                                                                                             gatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggcca                                                        <  8:10278‑M2/95‑1 (MQ=255)
                                                                                                   tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggccaggcca                                                   <  6:18072‑M2/100‑1 (MQ=255)
                                                                                                   tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggccag                                                       <  1:252701‑M2/96‑1 (MQ=255)
                                                                                                     cgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGgccagc                                                 <  2:296907‑M2/102‑1 (MQ=255)
                                                                                                      gcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGc                                                                                                                                  >  4:201743‑M2/46‑66 (MQ=255)
                                                                                                      gcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGc                                                                                                                                  <  3:201743‑M2/21‑1 (MQ=255)
                                                                                                      gcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGgccagcc                                                >  8:231307‑M2/46‑148 (MQ=255)
                                                                                                        gcggatcaatctctggcccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACGCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCAt                                              >  1:180694‑M2/44‑148 (MQ=255)
                                                                                                        gcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATa                                             <  7:99251‑M2/106‑1 (MQ=255)
                                                                                                          ggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAAc                                           <  8:28039‑M2/108‑1 (MQ=255)
                                                                                                           gatgaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTTAAGAGGATATTCATCATCGAGAAGTGCATTAACGCGTGTGTGAAGTAACGCCAGAACTCAATTTTCAgt                                                                         <  7:11459‑M2/78‑1 (MQ=255)
                                                                                                             tcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACAt                                         >  5:152770‑M2/39‑148 (MQ=255)
                                                                                                                 tctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACtt                                    >  8:388976‑M2/35‑149 (MQ=255)
                                                                                                                 tctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACtt                                    >  4:76970‑M2/35‑149 (MQ=255)
                                                                                                                   tctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCCCTTcc                                  >  5:251174‑M2/33‑149 (MQ=255)
                                                                                                                     tggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTcc                                  <  4:144637‑M2/117‑1 (MQ=255)
                                                                                                                       gaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCt                                 <  5:51319‑M2/118‑1 (MQ=255)
                                                                                                                       gaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGACAGAACTCAAATTTCAGTGTTGGATCGAAt                                                             <  5:301423‑M2/90‑1 (MQ=255)
                                                                                                                       gaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGACAGAACTCAAATTTCAGTGTTGGATCGAAt                                                             >  6:301423‑M2/29‑118 (MQ=255)
                                                                                                                          cttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACACAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACa                                          >  7:293239‑M2/26‑134 (MQ=255)
                                                                                                                          cttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACACAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACa                                          <  8:293239‑M2/109‑1 (MQ=255)
                                                                                                                           ttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGcc                          >  8:270500‑M2/25‑149 (MQ=255)
                                                                                                                            tcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGcc                          >  5:291031‑M2/24‑148 (MQ=255)
                                                                                                                              accctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtg                                                                        >  6:19143‑M2/22‑100 (MQ=255)
                                                                                                                              accctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtg                                                                        <  5:19143‑M2/79‑1 (MQ=255)
                                                                                                                              accctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCga                        <  3:217933‑M2/127‑1 (MQ=255)
                                                                                                                               ccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCgag                       >  3:36167‑M2/21‑148 (MQ=255)
                                                                                                                               ccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCgag                       >  6:165777‑M2/21‑148 (MQ=255)
                                                                                                                                cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGgccagc                                                 <  2:309281‑M2/102‑1 (MQ=255)
                                                                                                                                cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGgccagc                                                 >  1:309281‑M2/20‑121 (MQ=255)
                                                                                                                                cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGaa                     >  5:346120‑M2/20‑149 (MQ=255)
                                                                                                                                            acgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCaa         >  8:279128‑M2/8‑149 (MQ=255)
                                                                                                                                             cgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCaa         <  8:125484‑M2/142‑1 (MQ=255)
                                                                                                                                              gccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAAt        >  2:24528‑M2/6‑148 (MQ=255)
                                                                                                                                                 agAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAac    <  3:243209‑M2/147‑1 (MQ=255)
                                                                                                                                                   agCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAacac  <  5:165777/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TACACCACGCCAGAAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAACAC  >  NC_000913/3560839‑3561134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑