New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1784702 =	43 (1.180)	6 (0.180)	6/234	3.3	12.2%	intergenic (+25/+32)	fadK/ppsA	short chain acyl‑CoA synthetase, anaerobic/phosphoenolpyruvate synthase
	?	NC_000913	1784727 =	46 (1.350)					intergenic (+50/+7)	fadK/ppsA	short chain acyl‑CoA synthetase, anaerobic/phosphoenolpyruvate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATATCGTGGTAATCGAAAAACTACCGCGAACTACCTCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCGGCAAAGTCTTCGTGGT  >  NC_000913/1784562‑1784843                                                                                                                                             |                                                                                                                                              atatCGTGGTAATCGAAAAACTACCGCGAACTACCTCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACTCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGa                                                                                                                                       <  3:21973/149‑1 (MQ=255)      gTGGTAATCGAAAAACTACCGCGAACTACCTCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTaaa                                                                                                                                  >  5:24616/1‑149 (MQ=255)                 aaaaCTACCGCGAACTACCTCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCgggg                                                                                                                       <  5:3251/149‑1 (MQ=255)                         cgcgAACTACCTCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGatttattt                                                                                                               >  6:78291/1‑149 (MQ=255)                            gAACTACCTCAGGTAAAATACAAAAGCTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGAtttattttat                                                                                                            <  1:167681/149‑1 (MQ=255)                               cTACCTCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATttc                                                                                                         <  5:78291/149‑1 (MQ=255)                                    tCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGAtttatttt                                                                                                              <  4:131587/139‑1 (MQ=255)                                    tCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGAtttatttt                                                                                                              >  3:131587/1‑139 (MQ=255)                                      aGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCttcagtt                                                                                                  <  7:38905/149‑1 (MQ=255)                                      aGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCttcagtt                                                                                                  >  3:125804/1‑149 (MQ=255)                                      aGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCttcag                                                                                                    <  4:8311/147‑1 (MQ=255)                                          aaaaTACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGc                                                                                              >  8:39840/1‑149 (MQ=255)                                            aaTACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCa                                                                                            <  7:39840/149‑1 (MQ=255)                                               aCAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGc                                                                                         >  6:126412/1‑149 (MQ=255)                                                 aaaaGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCt                                                                                        >  2:113946/1‑148 (MQ=255)                                                  aaaGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCtt                                                                                       >  5:131302/1‑148 (MQ=255)                                                       ttttGTTATGAATATAT‑TTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGGTTCAGCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAg                                                                                 <  7:79995/148‑1 (MQ=255)                                                                  aaaGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGcaccac                                                                      <  6:131302/149‑1 (MQ=255)                                                                   aaGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACg                                                                     <  6:24616/149‑1 (MQ=255)                                                                   aaGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACg                                                                     <  4:125804/149‑1 (MQ=255)                                                                                       aCGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAg                                                 <  5:126412/149‑1 (MQ=255)                                                                                                   tgtgAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGca                                                                          >  1:15311/1‑112 (MQ=255)                                                                                                   tgtgAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGca                                                                          <  2:15311/112‑1 (MQ=255)                                                                                                     tgAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCttcagttc                                                                                                 <  3:80814/87‑1 (MQ=255)                                                                                                     tgAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCttcagttc                                                                                                 >  4:80814/1‑87 (MQ=255)                                                                                                     tgAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATccc                                     <  1:113946/147‑1 (MQ=255)                                                                                                       aaGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTACACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCctct                                 >  1:91528/1‑149 (MQ=255)                                                                                                       aaGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACg                                                                     >  2:58620/1‑113 (MQ=255)                                                                                                       aaGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACg                                                                     <  1:58620/113‑1 (MQ=255)                                                                                                        agagATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTa                                             <  2:190084/136‑1 (MQ=255)                                                                                                        agagATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTa                                             >  1:190084/1‑136 (MQ=255)                                                                                                                aaTAAGTTTCATCTTCGGGGATCACATAACCCCGGCGCCTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAAc                        >  6:98421/1‑149 (MQ=255)                                                                                                                aaTAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGca                                                                          <  5:177703/99‑1 (MQ=255)                                                                                                                aaTAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGca                                                                          >  6:177703/1‑99 (MQ=255)                                                                                                                aaTAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACa                                                  >  4:153407/1‑123 (MQ=255)                                                                                                                aaTAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACa                                                  <  3:153407/123‑1 (MQ=255)                                                                                                                           tCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCGGCa               >  1:21907/1‑147 (MQ=255)                                                                                                                                  ggATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCGGCAAAGTCTTCg      <  2:21907/149‑1 (MQ=255)                                                                                                                                   gATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCGGCAAAGTCTTCGt     >  2:106556/1‑149 (MQ=255)                                                                                                                                       acaTAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCg                  >  2:93742/1‑132 (MQ=255)                                                                                                                                        caTAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCctct                                 >  3:26440/1‑116 (MQ=255)                                                                                                                                        caTAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCctct                                 <  4:26440/116‑1 (MQ=255)                                                                                                                                         aTAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCg                  <  4:127330/130‑1 (MQ=255)                                                                                                                                             ccccGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCGGCAAAGTCTTCGTGGt  <  6:55743/142‑1 (MQ=255)                                                                                                                                             ccccGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCGGCAAAGTCTTCGTGGt  >  5:55743/1‑142 (MQ=255)                                                                                                                                             |                                                                                                                                              ATATCGTGGTAATCGAAAAACTACCGCGAACTACCTCAGGTAAAATACAAAAGTTTTTGTTAAGAAAAGATATTATGCGGCGTTTAACGCAGGATGTCTGTGAAGAGATTGAATAAGTTTCATCTTCGGGGATCACATAACCCCGGCGACTAAACGCCGCCGGGGATTTATTTTATTTCTTCAGTTCAGCCAGGCTTAACCAGGTTTGCACCACGGTGTCCGGGTTCAGAGACAGGCTATCGATCCCCTCTTCCATCAACCATGCGGCAAAGTCTTCGTGGT  >  NC_000913/1784562‑1784843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.