New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1442174 =	119 (1.340)	3 (0.040)	3/248	NT	2.9%	coding (670/990 nt)	ldhA	fermentative D‑lactate dehydrogenase, NAD‑dependent
	?	NC_000913	1442209 =	89 (1.080)					coding (635/990 nt)	ldhA	fermentative D‑lactate dehydrogenase, NAD‑dependent
Rejected: Frequency below/above cutoff threshold.

TTCGATCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1442327‑1442174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagatgaTAGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCACTTGGATACGGATCGAACGCCAGCAGACGCATACCAAAACCTTTCA  >  NC_000913/1442209‑1442356                                                                                                                                                                                                                                                                                                                 TTCGATCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACA                                                                                                                                                           <  3:141696/149‑1   CGATCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAA                                                                                                                                                             >  2:395548/1‑145    GATCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGAT                                                                                                                                                        >  2:82222/1‑149    GATCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGA                                                                                                                                                         <  1:395548/148‑1     ATCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGAT                                                                                                                                                        >  8:195435/1‑148      TCCGTATCCAAGTGCAGCGGTGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGATG                                                                                                                                                       >  8:43360/1‑148      TCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGCCACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGATG                                                                                                                                                       >  7:174409/1‑148                                                             ACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTTCGAAGGCGGCTTCGTTC‑AACAGATGATAGTTTTCC                                                                                                                                             <  2:166798/103‑1                                                             ACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTTCGAAGGCGGCTTCGTTC‑AACAGATGATAGTTTTCC                                                                                                                                             >  1:166798/1‑103                                                                                                                GAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGATGATAGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCACTTG                                            >  2:190226/1‑149                                                                                                                                                   AACAGATGATAGTTTTCCGGTGTCAGCGGGCAGTGCGGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCAATTGGATACGGATCGAACGCCAGCAGACGCATACCAA           >  3:117559/1‑148                                                                                                                                                    ACAGATGATTGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACCCCGAGTTCCAGCGCCGCAGCACTTGGCTACGGATCTAACGCCAGCAGACGCATAACAAca         >  6:190032/1‑147                                                                                                                                                     CAGATGATAGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCACTTGGATACGGATCGAACGCCAGCAGACGCATACCAAAAC        <  3:64525/149‑1                                                                                                                                                      AGATGATAGTTTTCCTGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCACTTGGATACGGATCGAACGCCAGCAGACGCATACCAAAACC       >  1:181508/1‑149                                                                                                                                                        ATGATAGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCTACATACTCCACACCGAGTTCCGGCGCCGCTGCACTTGGATACGGATCGAAGGCCAGCAGACGCAGACCAAAgactt     >  8:276705/1‑144                                                                                                                                                          GATAGTTTTCCGGTGTCAGCGGGCAGAGCAGAGAGATAACGTCTGATTCAGAGAACACGGTTGGCAGATCGACATACTCCACACCGAGTTACAGCGCCTCTGAACTTGGATACGGATCGAACGCCAGCAGACGCATACCAAAACCTTT    >  3:357013/1‑148                                                                                                                                                           ATAGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCACTTGGATACGGATCGAACGCCAGTAGACGCATACCAAAACCTTg    >  7:369295/1‑146                                                                                                                                                           ATAGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCACTTGGATACGGATCGAACGCCAGCAGACGCATACCAAAACCTTTCA  <  1:190226/149‑1                                                                                                                                                                                                                                                                                                                 TTCGATCCGTATCCAAGTGCAGCGGCGCTGGAACTCGGTGTGGAGTATGTCGATCTGCCAACCCTGTTCTCTGAATCAGACGTTATCTCTCTGCACTGCCCGCTGACACCGGAAAACTATCATCTGTT‑GAACGAAGCCGCCTTCGAACAGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1442327‑1442174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagatgaTAGTTTTCCGGTGTCAGCGGGCAGTGCAGAGAGATAACGTCTGATTCAGAGAACAGGGTTGGCAGATCGACATACTCCACACCGAGTTCCAGCGCCGCTGCACTTGGATACGGATCGAACGCCAGCAGACGCATACCAAAACCTTTCA  >  NC_000913/1442209‑1442356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.