New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2146839	82 (0.930)	3 (0.040)	3/254	NT	3.4%	coding (702/849 nt)	alkA	3‑methyl‑adenine DNA glycosylase II
	?	NC_000913	= 2146852	90 (1.060)					coding (689/849 nt)	alkA	3‑methyl‑adenine DNA glycosylase II
Rejected: Frequency below/above cutoff threshold.

AACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTCCCGGAAATCGCTGTTTAATCAGATAATCATCCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2146688‑2146839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaggCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTATACGGAAGGCTGGCAACC  <  NC_000913/2146852‑2146705                                                                                                                                                                                                                                                                                                               AACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTCCCGGAAATCGCTGTTTAATCAGATAATCATCCGGC                                                                                                                                                          <  7:6953/149‑1    GTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTCCCGGAAATCGCTGTTTAATCAGATAATCATCCGGCAGG                                                                                                                                                       <  5:36696/149‑1     TCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTGATTCCCGGAAATCGCTGTTTAATCAGATAATCATCCGGCAGG                                                                                                                                                       >  3:134544/1‑148                                                        ATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTCCCGGAAATCGCTGTTTAATCAGATAATCATCCGGCAGGCGAAAGATGTTT‑TCCTGCCGGATGAT                                                                                                                            <  1:231434/123‑1                                                        ATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTCCCGGAAATCGCTGTTTAATCAGATAATCATCCGGCAGGCGAAAGATGTTT‑TCCTGCCGGATGAT                                                                                                                            >  2:231434/1‑123                                                                                                                                      CAGATAATCATCCGGCAGG‑AAAACATCTTTCGCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTA                    >  2:129428/1‑149                                                                                                                                                    GCAGGCGAAAGATGTTT‑TCCTGCCTGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTATACGGAAGGCTG        <  6:87808/147‑1                                                                                                                                                     CAGGCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTATACGGAAGGCTGGC      >  2:1014/1‑148                                                                                                                                                     CAGGCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTATACGGAAGGCTGGC      >  7:334477/1‑148                                                                                                                                                      AGGCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAA                                                        >  3:141281/1‑97                                                                                                                                                      AGGCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAA                                                        <  4:141281/97‑1                                                                                                                                                        GCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTATACGGAAGGCTGGCAACC  <  7:17273/149‑1                                                                                                                                                        GCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTATACGGAAGGCTGGCAAC   >  6:2295/1‑148                                                                                                                                                                                                                                                                                                               AACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTCCCGGAAATCGCTGTTTAATCAGATAATCATCCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2146688‑2146839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaggCGAAAGATGTTT‑TCCTGCCGGATGATTATCTGATTAAACAGCGATTTCCGGGAATGACACCGGCGCAAATCCGCCGTTATGCCGAGCGCTGGAAGCCCTGGCGTTCTTATGCGCTGTTGCATATCTGGTATACGGAAGGCTGGCAACC  <  NC_000913/2146852‑2146705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.