New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 346823	NA (NA)	6 (0.180)	6/246	2.7	NA	intergenic (+64/+34)	yahO/prpR	periplasmic protein, function unknown, YhcN family/propionate catabolism operon regulatory protein
	?	NC_000913	= 346853	NA (NA)					noncoding (30/30 nt)	REP24 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP24 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAAAGGGGCTGATGTGTTGGTACTGACCTCCGGTCAAACTGACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATgccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/346675‑346823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGAATGCAGCGCGAACGCTTTATCCGGCATAAATTTCAATAGATGATCACCGATAAACTTACGCATCGGAGATGTTTACATAGGATTCAGAATTACTTCTTCTTATAAATATTTGCCGTGCCGTGGATCTTATTG  <  NC_000913/346853‑346717                                                                                                                                                                                                                                                                                                AAAAGGGGCTGATGTGTTGGTACTGACCTCCGGTCAAACTGACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTAT                                                                                                                                           <  6:13888/149‑1  AAAGGGGCTGATGTGTTGGTACTGACCTCCGGTCAAACTGACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATG                                                                                                                                          >  1:5134/1‑149  AAAGGGGCTGATGTGTTGGTACTGACCTCCGGTCAAACTGACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATG                                                                                                                                          >  5:38003/1‑149                      ACTGACCTCCGGTCAAACTGACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATGCCGAATGCAGCGCGAACGCT                                                                                                                      >  4:138136/1‑149                                         GACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTAT                                                                                                                                           >  1:78952/1‑109                                         GACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTAT                                                                                                                                           <  2:78952/109‑1                                              TAAGATCCACGGCACGGCAAATATTCATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATGCC                                                                                                                                        <  5:154327/107‑1                                              TAAGATCCACGGCACGGCAAATATTCATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATGCC                                                                                                                                        >  6:154327/1‑107                                                                                                     AAACATCTCCGATGCGTAAGTTTATCGGCGATCATCTATTGAAATTTATGCCGAATGCAGCGCGAACGCTTTATCCGGCATAAAT                                                                                                       >  1:58814/1‑85                                                                                                     AAACATCTCCGATGCGTAAGTTTATCGGCGATCATCTATTGAAATTTATGCCGAATGCAGCGCGAACGCTTTATCCGGCATAAAT                                                                                                       <  2:58814/85‑1                                                                                                       ACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATGCCGAATGCAGCGCGAACGCTTTATCCGGC                                                                                                             >  3:94660/1‑77                                                                                                       ACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATGCCGAATGCAGCGCGAACGCTTTATCCGGC                                                                                                             <  4:94660/77‑1                                                                                                                                          ATTGAAATTTATGCCGGATAAAGCGTTCGCGCTGCATTCGGCATAAATTTCAATAGATGATCACCGATAAACTTACGCATCGGAGATGTTTACATAGGATTCAGAATTACTTCTTCTTATAAATATTTGCCGTGCCGTGGATCTTATTG  >  3:138136/1‑149                                                                                                                                                       CCGAATGCAGCGCGAACGCTTTATCCGGCATAAATTTCAATAGATGATCACCGATAAACTTACGCATCGGAGATGTTTACATAGGATTCAGAATTACTTCTTCTTATAAATATTTGCCGTGCCGTGGATCTTAT    <  1:110151/134‑1                                                                                                                                                       CCGAATGCAGCGCGAACGCTTTATCCGGCATAAATTTCAATAGATGATCACCGATAAACTTACGCATCGGAGATGTTTACATAGGATTCAGAATTACTTCTTCTTATAAATATTTGCCGTGCCGTGGATCTTAT    >  2:110151/1‑134                                                                                                                                                                                                                                                                                                AAAAGGGGCTGATGTGTTGGTACTGACCTCCGGTCAAACTGACAATAAGATCCACGGCACGGCAAATATTTATAAGAAGAAGTAATTCTGAATCCTATGTAAACATCTCCGATGCGTAAGTTTATCGGTGATCATCTATTGAAATTTATgccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/346675‑346823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGAATGCAGCGCGAACGCTTTATCCGGCATAAATTTCAATAGATGATCACCGATAAACTTACGCATCGGAGATGTTTACATAGGATTCAGAATTACTTCTTCTTATAAATATTTGCCGTGCCGTGGATCTTATTG  <  NC_000913/346853‑346717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.