New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4071224 =	52 (1.510)	5 (0.150)	5/244	3.0	8.7%	coding (533/1242 nt)	yihS	sulphoquinovose isomerase
	?	NC_000913	4071255 =	56 (1.700)					coding (502/1242 nt)	yihS	sulphoquinovose isomerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACTGGGTATCGAAGTGTTCGTTAACGCGATAATGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGG  >  NC_000913/4071086‑4071372                                                                                                                                           |                                                                                                                                                     cACTGGGTATCGAAGTGTTCGTTAAAGCGATAATGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCa                                                                                                                                             >  7:7608/1‑148 (MQ=255)                tgtTCGTTAACGCGATAATGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCa                                                                                                                                     <  4:14829/141‑1 (MQ=255)                tgtTCGTTAACGCGATAATGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCAATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCa                                                                                                                                     >  3:14829/1‑141 (MQ=255)                  ttCGTTAACGCGATAATGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTg                                                                                                                                        <  1:106357/136‑1 (MQ=255)                  ttCGTTAACGCGATAATGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTg                                                                                                                                        >  2:106357/1‑136 (MQ=255)                                  tGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGtttt                                                                                                           >  4:65479/1‑149 (MQ=255)                                  tGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGtttt                                                                                                           <  3:65479/149‑1 (MQ=255)                                         ttCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAg                                                                                                    >  1:169051/1‑149 (MQ=255)                                                      gtGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAg                                                                                        >  6:93/1‑148 (MQ=255)                                                       tGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGa                                                                                      >  2:134113/1‑149 (MQ=255)                                                       tGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGa                                                                                      <  2:169051/149‑1 (MQ=255)                                                         gATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGaa                                                                                                     <  1:2725/132‑1 (MQ=255)                                                         gATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGaa                                                                                                     >  2:2725/1‑132 (MQ=255)                                                         gATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGAtt                                                                                    >  4:145819/1‑149 (MQ=255)                                                              tCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAgg                                                                               >  1:50011/1‑149 (MQ=255)                                                                aCGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGt                                                                                             >  6:61980/1‑133 (MQ=255)                                                                aCGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGt                                                                                             <  5:61980/133‑1 (MQ=255)                                                                        cACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCg                                                                                                                >  2:28066/1‑106 (MQ=255)                                                                        cACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCg                                                                                                                <  1:28066/106‑1 (MQ=255)                                                                         aCGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCa                                                                                         >  5:30853/1‑128 (MQ=255)                                                                         aCGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCa                                                                                         <  6:30853/128‑1 (MQ=255)                                                                           gcgAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACCTCTGCtctt                                                                  >  3:104674/1‑149 (MQ=255)                                                                                          cAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCa                                                                                 >  3:87698/1‑119 (MQ=255)                                                                                          cAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCa                                                                                 <  4:87698/119‑1 (MQ=255)                                                                                          cAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGaaa                                                    <  1:134113/148‑1 (MQ=255)                                                                                           aGCGATTTTTTGTCGTGAGTGACGTGATAAACAATCAAGAAAGCTTCCAACGCGTGCATATTGGCATTGCCGCCGAGGTACTCTTCGGGTTTGCTGAAGGCTTCGTCAGAGGATTACAGGCGCATGTGCTCTTCGTCGCTCCAGAAata                                                  >  8:141098/1‑149 (MQ=255)                                                                                            gCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAatat                                                 >  2:125919/1‑149 (MQ=255)                                                                                              cATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATAtt                                                >  1:92757/1‑148 (MQ=255)                                                                                               aTTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCgg                                                                                                                         <  7:23457/74‑1 (MQ=255)                                                                                               aTTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCgg                                                                                                                         >  8:23457/1‑74 (MQ=255)                                                                                                         gtgagtgaCGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAAttt                                    >  3:124860/1‑149 (MQ=255)                                                                                                          tgagtgaCGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAAttt                                    >  3:57335/1‑148 (MQ=255)                                                                                                            agtgaCGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCaa                                 <  1:125919/149‑1 (MQ=255)                                                                                                              tgaCGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATg                               <  3:145819/149‑1 (MQ=255)                                                                                                                gcttCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGgt                             <  5:120000/146‑1 (MQ=255)                                                                                                                aCGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGgt                             >  8:128774/1‑149 (MQ=255)                                                                                                                  gTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCTGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGgtgt                           <  7:141098/149‑1 (MQ=255)                                                                                                                    cATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGgt                             >  6:120000/1‑145 (MQ=255)                                                                                                                      tAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATc                       >  8:80126/1‑149 (MQ=255)                                                                                                                        aaCAATCAAGAAAGCGTCCCCCGCGGGCATCTTGGCAGTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGa                     <  4:104674/149‑1 (MQ=255)                                                                                                                         cgagctaaGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGGTTTGCTGAAGGCTTCGTCCCAGGATGCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGGAATCGag                    <  7:31982/143‑1 (MQ=255)                                                                                                                          cAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGagc                   <  2:92757/149‑1 (MQ=255)                                                                                                                             tCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCa                                                                                 <  4:127837/84‑1 (MQ=255)                                                                                                                             tCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCa                                                                                 >  3:127837/1‑84 (MQ=255)                                                                                                                               aaGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGgt                             >  1:188187/1‑134 (MQ=255)                                                                                                                               aaGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGgt                             <  2:188187/134‑1 (MQ=255)                                                                                                                                aGAAAGCTTCCACCGTGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCaa                                 >  4:14160/1‑129 (MQ=255)                                                                                                                                aGAAAGCTTCCACCGTGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCaa                                 <  3:14160/129‑1 (MQ=255)                                                                                                                                aGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTACTCGATAATTTCAATGGTGTAATCGag                    >  8:31982/1‑142 (MQ=255)                                                                                                                                         ccACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTc     <  4:57335/148‑1 (MQ=255)                                                                                                                                          cACCGCGTGCATATTGGCATTGCCGCCGCTGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATc                                                                         <  2:35695/79‑1 (MQ=255)                                                                                                                                          cACCGCGTGCATATTGGCATTGCCGCCGCTGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATc                                                                         >  1:35695/1‑79 (MQ=255)                                                                                                                                           aCCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCgg  <  7:128774/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                     CACTGGGTATCGAAGTGTTCGTTAACGCGATAATGATTATTTCTGGCGACGTCGTGGATAATCACGGAAGCCACGCGAATCGCGCGATCCAGCCATTTTTTGTCGTGAGTGACGTCATAAACAATCAAGAAAGCTTCCACCGCGTGCATATTGGCATTGCCGCCGCGGTACTCTTCGGTTTTGCTGAAGGCTTCGTCCCAGGATTCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGG  >  NC_000913/4071086‑4071372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.