New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2487982	29 (0.840)	5 (0.160)	5/238	3.0	15.2%	intergenic (+15/+41)	evgS/yfdE	hybrid sensory histidine kinase in two‑component regulatory system with EvgA/acetyl‑CoA:oxalate CoA‑transferase
	?	NC_000913	= 2487991	29 (0.910)					intergenic (+24/+32)	evgS/yfdE	hybrid sensory histidine kinase in two‑component regulatory system with EvgA/acetyl‑CoA:oxalate CoA‑transferase
Rejected: Frequency below/above cutoff threshold.

ATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCGGCATAACATGCGGGTCCGCGCAGCCGCTGATTTTTATCGGATTACCCG  >  NC_000913/2487840‑2488129                                                                                                                                               |                                                                                                                                                    aTCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGtt                                                                                                                                                >  2:193201/1‑148 (MQ=255)      ttAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAAtg                                                                                                                                          <  5:20713‑M2/149‑3 (MQ=255)                   cTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTa                                                                                                                             >  4:69035/1‑149 (MQ=255)                   cTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTa                                                                                                                             >  3:15886/1‑149 (MQ=255)                      tttCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAtttgaacattgtggg                                                                                                                                      <  2:26727‑M1/137‑16 (MQ=255)                      tttCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAtttgaacattgtggg                                                                                                                                      >  1:26727‑M1/1‑122 (MQ=255)                          aGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAAtgtg                                                                                                                                        >  6:41941‑M2/1‑127 (MQ=255)                          aGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAAtgtg                                                                                                                                        <  5:41941‑M2/131‑5 (MQ=255)                                   tAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACATTTGAACATtgtgggagccgctatttagtcatttttctga                                                                                                             >  5:30103‑M2/1‑118 (MQ=255)                                        cTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTatg                                                                                                        <  6:20713/149‑1 (MQ=255)                                         tGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTatga                                                                                                       >  2:187844/1‑149 (MQ=255)                                         tGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTatga                                                                                                       >  4:105211/1‑149 (MQ=255)                                           aaaTTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTatgat                                                                                                      <  1:193201/148‑1 (MQ=255)                                           aaaTTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTatgat                                                                                                      <  3:69035/148‑1 (MQ=255)                                                                   tAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTc                                                                               <  4:15886/147‑1 (MQ=255)                                                                      aaGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACT‑AATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATg                                                                         >  1:118287/1‑149 (MQ=255)                                                                           cacaTTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTcc                                                                              >  6:153463/1‑140 (MQ=255)                                                                           cacaTTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTcc                                                                              <  5:153463/140‑1 (MQ=255)                                                                            acaTTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGt                                                                    <  1:187844/149‑1 (MQ=255)                                                                            acaTTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACT‑AATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTc                                                                   <  2:118287/149‑1 (MQ=255)                                                                               ttGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTc                                                                   >  1:185055/1‑147 (MQ=255)                                                                                       cTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAtttgaacattgtggga                                                                                                                                     >  2:194501‑M1/1‑57 (MQ=255)                                                                                       cTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAtttgaacattgtggga                                                                                                                                     <  1:194501‑M1/73‑17 (MQ=255)                                                                                        tGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCg                                                        >  7:59151/1‑149 (MQ=255)                                                                                             cAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTccc                                                   >  3:18083/1‑149 (MQ=255)                                                                                               ggAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCgg                                                 <  3:105211/149‑1 (MQ=255)                                                                                                                 tCAGAAAAATGACTAAATAGCGGCTCCCACAatgttcaaatgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccagctctgcaatgtgttcttttacagagttcagcaactgaagaatttcaggctta                               >  5:30103‑M1/1‑31 (MQ=255)                                                                                                                              tAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCGGCATAACATGCGGGTCCGCGCAGCCGCTGAtt                  >  4:7313/1‑149 (MQ=255)                                                                                                                                aaTAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCGGCATAACATGCGGGTCCGCGCAGCCGCTGAtttt                >  1:176305/1‑149 (MQ=255)                                                                                                                                       gCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCGGCATAACATGCGGGTCCGCGCAGCCGCTGATTTTTATCGGa         <  3:7313/149‑1 (MQ=255)                                                                                                                                       gCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCGGCATAACATGCGGGTCCGCGCAGCCGCTGATTTTTATCGGa         <  2:185055/149‑1 (MQ=255)                                                                                                                                         tCCCACAATGTTCAAAtgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccag                                                                                   >  2:194501‑M2/1‑16 (MQ=255)                                                                                                                                         tCCCACAATGTTCAAAtgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccag                                                                                   <  1:194501‑M2/73‑58 (MQ=255)                                                                                                                                         tCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCGGCATAACATGCGGGTCCGCGCAGCCGCTGATTTTTATCGGAt        >  1:30825/1‑148 (MQ=255)                                                                                                                                          cccACAATGTTCAAAtgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccagctctgcaatgtgttcttttacagagttcagcaactgaagaatttcaggcttactgtcatctgaaa                  >  1:26727‑M2/1‑15 (MQ=255)                                                                                                                                          cccACAATGTTCAAAtgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccagctctgcaatgtgttcttttacagagttcagcaactgaagaatttcaggcttactgtcatctgaaa                  <  2:26727‑M2/137‑123 (MQ=255)                                                                                                                                           ccACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCAt                                                                          >  4:55377/1‑80 (MQ=255)                                                                                                                                           ccACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCAt                                                                          <  3:55377/80‑1 (MQ=255)                                                                                                                                            cacatttgaacattgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccagctctgcaatgtgttcttttacagagttcagcaactgaagaatttcaggcttactgtcatct                      >  6:41941‑M1/1‑4 (MQ=255)                                                                                                                                            cacatttgaacattgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccagctctgcaatgtgttcttttacagagttcagcaactgaagaatttcaggcttactgtcatct                      <  5:41941‑M1/131‑128 (MQ=255)                                                                                                                                            cacaATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGc                                                          <  3:95047/95‑1 (MQ=255)                                                                                                                                            cacaATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGc                                                          >  4:95047/1‑95 (MQ=255)                                                                                                                                            cacaATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGc                                                          >  4:93035/1‑95 (MQ=255)                                                                                                                                            cacaATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGc                                                          <  3:93035/95‑1 (MQ=255)                                                                                                                                              catttgaacattgtgggagccgctatttagtcatttttctgacagaaaacagcaatctcctggtccagctctgcaatgtgttcttttacagagttcagcaactgaagaatttcaggcttactgtcatctgaaacaggtgttatttctaa  <  5:20713‑M1/149‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                    ATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTGCTGAACTCTGTAAAAGAACACATTGCAGAGCTGGACCAGGAGATTGCTGTTTTCTGTCAGAAAAATGACTAAATAGCGGCTCCCACAATGTTCAAATGTGGGAGCTATTTACCAGCACATCTTACATTTATGATGAGAACTCCTGGCGAATTTGTTCCCCATGCTGGTCGAGCGTTGCCGCTCCCGGCATAACATGCGGGTCCGCGCAGCCGCTGATTTTTATCGGATTACCCG  >  NC_000913/2487840‑2488129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.