| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2883264 = | 38 (1.100) | 5 (0.150) | 5/242 | 3.0 | 12.8% | coding (875/1509 nt) | casA | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| ? | NC_000913 | 2883296 = | 32 (0.980) | coding (843/1509 nt) | casA | CRISP RNA (crRNA) containing Cascade antiviral complex protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATG > NC_000913/2883118‑2883407 | tttGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTcc > 4:21962/1‑149 (MQ=255)tttGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATATTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTcc > 7:43479/1‑149 (MQ=255) tggcaaccagcgcatattgaattatgcgatcccattgggattggtaaatgttcttgctgtggacaggaaagcaatttgcgttataccggttttcttaaggaaaaatttacctttacagttaatgggctatggccccatccgcatTcccc < 6:37777‑M1/5‑1 (MQ=255) gcAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCtt < 3:21962/149‑1 (MQ=255) tGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTccc > 1:29388/1‑132 (MQ=255) tGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTccc < 2:29388/132‑1 (MQ=255) cgatcccattgggattggtaaatgttcttgctgtggacaggaaagcaatttgcgttataccggttttcttaaggaaaaatttacctttacagttaatgggctatggccccatccgcatTCCCCTT‑TCTTGACTGTTACCAGACAAggg > 7:33047‑M1/119‑148 (MQ=255) aaCCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCtt > 1:180062/1‑126 (MQ=255) aaCCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCtt < 2:180062/126‑1 (MQ=255) ccgccgCCACGCGATTTCCATTTTCATTTTGAATAATATTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGc < 8:43479/149‑1 (MQ=255) gggattggtaaatgttcttgctgtggacaggaaagcaatttgcgttataccggttttcttaaggaaaaatttacctttacagttaatgggctatggccccatccgcatTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATg < 4:44755‑M1/41‑1 (MQ=255) tcattttGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAg > 6:126970/1‑113 (MQ=255) tcattttGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAg < 5:126970/113‑1 (MQ=255) ttttGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTg > 7:27966/1‑148 (MQ=255) gacaggaaagcaatttgcgttataccggttttcttaaggaaaaatttacctttacagttaatgggctatggccccatccgcatTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCg > 2:50478‑M1/84‑120 (MQ=255) gacaggaaagcaatttgcgttataccggttttcttaaggaaaaatttacctttacagttaatgggctatggccccatccgcatTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCg < 1:50478‑M1/37‑1 (MQ=255) aCCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGt > 5:40223/1‑131 (MQ=255) aCCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGt < 6:40223/131‑1 (MQ=255) cTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGt > 6:3086/1‑79 (MQ=255) cTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGt < 5:3086/79‑1 (MQ=255) ggCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCg > 2:15285/1‑149 (MQ=255) ggCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCg > 2:101558/1‑149 (MQ=255) aTTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTTCCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTCTAAAGGTAAATTTTTCCTTAAGAAAACCGGtat > 1:81003/1‑148 (MQ=255) tttGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATaa < 2:49815/149‑1 (MQ=255) tgtgTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAAc < 1:15285/148‑1 (MQ=255) gtgtCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTc < 7:132175/127‑1 (MQ=255) gtgtCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTc > 8:132175/1‑127 (MQ=255) ccATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGt < 7:121089/138‑1 (MQ=255) ccATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGt > 8:121089/1‑138 (MQ=255) cATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAAtt > 4:148895/1‑149 (MQ=255) atgatgGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTg > 5:77883/1‑149 (MQ=255) gTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTcc > 4:45011/1‑149 (MQ=255) gTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTc < 3:148895/148‑1 (MQ=255) gtgAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑Tc > 4:53616/1‑36 (MQ=255) gtgAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑Tc < 3:53616/36‑1 (MQ=255) gtgAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGc < 6:77883/148‑1 (MQ=255) ttaatgggctatggccccatccgcatTCCCCTTGTCTGGTAACAGTCAAGA‑AAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGc < 3:44755‑M1/121‑1 (MQ=255) aaGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAAttt > 4:55641/1‑93 (MQ=255) aaGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAAttt < 3:55641/93‑1 (MQ=255) aaGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGACCACAGCAAGAACAtt < 3:45011/149‑1 (MQ=255) gAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTa > 5:37777/1‑149 (MQ=255) tCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAg < 4:72005/75‑1 (MQ=255) tCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAg > 3:72005/1‑75 (MQ=255) cAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATg > 5:35291/1‑149 (MQ=255) | TTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTT‑TCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATG > NC_000913/2883118‑2883407 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |