| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1355762 | 49 (0.560) | 3 (0.040) | 3/246 | NT | 5.9% | coding (1349/1644 nt) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 1355783 | 49 (0.600) | coding (1328/1644 nt) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein | |||||
CATAGGCTTCAATACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAGTTCGGCAGTTT > NC_000913/1355637‑1355927 | cATAGGCTTCAATACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTcg < 4:24008‑M2/149‑3 (MQ=255) aTAGGCTTCAATACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTcgt < 3:190057‑M2/149‑4 (MQ=255) aTAGGCTTCAATACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTcgt > 1:53646‑M2/1‑146 (MQ=255) aaTACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTcc < 2:17138/148‑1 (MQ=255) tACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTc < 1:110184/149‑1 (MQ=255) tACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTc < 3:156956/149‑1 (MQ=255) cgcgCCGCCAGCTGCTGCGAAGATAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGc < 1:240888/149‑1 (MQ=255) gcgcCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGAGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGcc > 1:208492/1‑149 (MQ=255) ccgccAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTCACGGACGGAAGAAACTGTCCGGGTCGGTACTGTCCGgcgcgcta > 2:111327/1‑145 (MQ=255) cgccAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAAc < 1:254599/149‑1 (MQ=255) ctgctgCGAAGAGAGCGCCTTACGCAATACGCTGGCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATa < 8:376795/149‑1 (MQ=255) aaGAGAGCGCCTTACGCAATACGCTGTCGAAGTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGATGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATCACGTCAGa < 1:351864/149‑1 (MQ=255) gcgcCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATgg > 3:348345/1‑149 (MQ=255) gcCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCt < 4:190057/149‑1 (MQ=255) aCGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCatat > 8:159878/1‑149 (MQ=255) aaTACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCAt > 4:6553/1‑149 (MQ=255) aaTACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCAt < 3:24008/149‑1 (MQ=255) aaTACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCAt > 3:33901/1‑149 (MQ=255) aTACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCAt > 1:209398/1‑148 (MQ=255) aTACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATc < 7:159878/149‑1 (MQ=255) tACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTcgtt > 4:178570‑M2/1‑95 (MQ=255) tACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTcgtt < 3:178570‑M2/99‑5 (MQ=255) cGCTGTCGAATTTCGGATCGCACCAGTGGGAGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCGCAACCGGATAACTGAAGATCATGGGTGATTTCCATCAAc > 6:331186/1‑149 (MQ=255) tCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCGGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACcgc < 7:378882/147‑1 (MQ=255) aaTTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCACCCGGATAACGTCAGATCATGGCTCATAACCATCAACCGCGcctc > 4:240114/1‑149 (MQ=255) aaTTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGcctc < 7:237903/149‑1 (MQ=255) aaTTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGcctc > 2:340749/1‑149 (MQ=255) tttCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTTAGATCATGGCTCATATCCATCAACCGCGcctcct < 8:374018/149‑1 (MQ=255) gATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAg < 1:231510/149‑1 (MQ=255) tCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCg < 1:53449/149‑1 (MQ=255) cACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGAcc < 2:209398/149‑1 (MQ=255) aCCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCt < 3:240114/149‑1 (MQ=255) aCCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCt < 1:340749/149‑1 (MQ=255) cAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGAGAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACATTc > 1:173956/1‑149 (MQ=255) tGGGCGATGTTTGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGTGTCGTTACTGTCCGTCGACCAACCGGATAACGTCAGATCATGGCGCATATCCATCAACCTCGCCTCCTGAAAGCGACCTTCTAc < 6:257371/149‑1 (MQ=255) ggTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATc < 3:6553/148‑1 (MQ=255) tGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATcacccc > 3:170541/1‑147 (MQ=255) tGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCAGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATcaccac > 6:22033/1‑149 (MQ=255) cGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGCTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACtt < 6:128269/149‑1 (MQ=255) gaatgaatTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACttt > 5:101237/1‑149 (MQ=255) aatgaatTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCGCCTATCCATCAACCGCGCCTCCTGAAAGCGACCGTCTACCGGCACAATCACCACttt > 3:299266/1‑148 (MQ=255) aatTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCAATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACg < 7:204916/148‑1 (MQ=255) ccGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAAcc > 4:358533/1‑149 (MQ=255) cTCAGTAACGGACGGAAGAAACTGTCCGGGTcgttactgagctgcgcggcaattcattcgcagaccaacctcgcccactggtgcgatccgaaattcgacagcgtattgcgtaaggcgctctcttcgcagcagctggcggcgcgtattg < 5:311300‑M2/148‑118 (MQ=255) tCAGTAACGGACGGAAGAAACTGTCCGGGTcgttactgagctgcgcggcaattcattcgcagaccaacctcgcccactggtgcgatccgaaattcgacagcgtattgcgtaaggcgctctcttcgcagcagctggcggcgcgtattg < 1:58005‑M2/147‑118 (MQ=255) aGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATc > 3:175017/1‑149 (MQ=255) gTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATcc > 8:385407/1‑149 (MQ=255) tAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCACCCGGATAACGTCAGATCATGGCTGAGATCCGTCAGCCGCGCCGCCTGAAAGCGACCTTCTACCGGCACAATCCCCCCTTTTACGCCCCCCTGCGCCagagacc > 2:188226/1‑143 (MQ=255) aaggacggaagTAACTGTCCGGGGcgttactgagctgcgcggcaattcattcgcagaccaacctcgccccctggtgcgatccgaaattcgacagcgtattgcgtaaggcgctctcttcgcagcagctggcggcgcgtattgaagcctat > 6:311300‑M2/3‑24 (MQ=255) acggaAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGaa > 8:21276/1‑149 (MQ=255) cggaAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAAt < 4:348345/149‑1 (MQ=255) ggaAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAAt > 2:205671/1‑148 (MQ=255) aagaaACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAg > 1:33166/1‑149 (MQ=255) gaaACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAGtt < 4:33901/149‑1 (MQ=255) aaaCTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCACCCTGCGCCATATCCGCCTGACTCAGTTc > 1:364958/1‑149 (MQ=255) aaCTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAGTTCg < 1:205312/149‑1 (MQ=255) cTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAGTTCgg > 7:30591/1‑148 (MQ=255) tCCGGGTCGTTACTGTCCGTCGCCCCACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAGTTCGGCAGt > 5:255311/1‑149 (MQ=255) cGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCCCCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAGTTCGGCAGttt > 7:354216/1‑149 (MQ=255) | CATAGGCTTCAATACGCGCCGCCAGCTGCTGCGAAGAGAGCGCCTTACGCAATACGCTGTCGAATTTCGGATCGCACCAGTGGGCGAGGTTGGTCTGCGAATGAATTGCCGCGCAGCTCAGTAACGGACGGAAGAAACTGTCCGGGTCGTTACTGTCCGTCGCCCAACCGGATAACGTCAGATCATGGCTCATATCCATCAACCGCGCCTCCTGAAAGCGACCTTCTACCGGCACAATCACCACTTTTACGCCAACCTGCGCCATATCCGCCTGAATCAGTTCGGCAGTTT > NC_000913/1355637‑1355927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |