mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.2% | 407.8 / 114.9 | 207 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 422,429 | 0 | T | G | 21.4% | 202.8 / 17.8 | 105 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 86 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168373 | 94 (0.550) | 13 (0.150) +66 bp |
8/140 | 9.8 | 15.6% | noncoding (2/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913 | = 4209753 | 180 (1.050) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 88 (0.510) | 13 (0.150) +66 bp |
8/140 | 9.8 | 15.9% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4209753 | 180 (1.050) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4168341 | 101 (0.590) | 15 (0.090) | 11/252 | 13.6 | 14.7% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 80 (0.500) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 88 (0.510) | 15 (0.090) | 11/252 | 13.6 | 15.3% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 84 (0.530) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4040683 | 182 (1.060) | 40 (0.240) | 11/268 | 14.1 | 17.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 211 (1.250) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 781222 | 168 (0.980) | 9 (0.050) +ATGT |
9/264 | 15.0 | 5.2% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 781839 | NA (NA) | intergenic (+187/‑246) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | = 3946824 | 49 (0.290) | 20 (0.120) | 9/268 | 15.1 | 14.8% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040681 | 182 (1.080) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 20 (0.120) | 9/268 | 15.1 | 10.0% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040683 | 182 (1.060) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | = 4579476 | 203 (1.180) | 8 (0.050) | 8/256 | 15.2 | 4.0% | intergenic (‑139/+23) | mcrB/symE | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB/toxic peptide regulated by antisense sRNA symR |
| ? | NC_000913 | = 4579481 | 191 (1.180) | intergenic (‑144/+18) | mcrB/symE | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB/toxic peptide regulated by antisense sRNA symR | |||||
| * | ? | NC_000913 | 1570598 = | 226 (1.320) | 8 (0.050) | 7/248 | 15.5 | 3.7% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 1570626 = | 205 (1.310) | intergenic (‑137/+19) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent | |||||