New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3385184	48 (1.310)	6 (0.170)	6/232	2.9	11.5%	intergenic (+11/‑354)	argR/yhcN	l‑arginine‑responsive arginine metabolism regulon transcriptional regulator/cadmium and peroxide resistance protein, stress‑induced
	?	NC_000913	= 3385197	46 (1.310)					intergenic (+24/‑341)	argR/yhcN	l‑arginine‑responsive arginine metabolism regulon transcriptional regulator/cadmium and peroxide resistance protein, stress‑induced
Rejected: Frequency below/above cutoff threshold.

GGTATTCTGGGCACCATCGCTGGCGATGACACCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACATTATGCAAAATTCATTATCTAATT  >  NC_000913/3385060‑3385342                                                                                                                                          |                                                                                                                                                  ggTATTCTGGGCACCATCGCTGGCGATGACACCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATg                                                                                                                                        >  1:70298/1‑149 (MQ=255)   tATTCTGGGCACCATCGCTGGCGATGACACCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGtt                                                                                                                                      <  5:85777/149‑1 (MQ=255)     ttCTGGGCACCATCGCTGGCGATGACACCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTg                                                                                                                                     <  2:70298/148‑1 (MQ=255)       cTGGGCACCATCGCTGGCGATGACACCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCt                                                                                                                                   >  6:17941/1‑148 (MQ=255)                     tGGCGATGACACCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAAccc                                                                                                                    >  1:104792/1‑149 (MQ=255)                               acCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGCCGTCAGAAACGAcggggcagagattaaa                                                                                                                                   >  8:115641‑M2/1‑108 (MQ=255)                               acCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGCCGTCAGAAACGAcggggcagagattaaa                                                                                                                                   <  7:115641‑M2/124‑17 (MQ=255)                                            ccccTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAAtt                                                                                             >  1:132452/1‑149 (MQ=255)                                                  cTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAAc                                                                                         <  5:17941/147‑1 (MQ=255)                                                           tCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGt                                                                              >  3:148622/1‑149 (MQ=255)                                                            cacaGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGtt                                                                             >  8:3147/1‑149 (MQ=255)                                                             acaGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGCCGTCAGAAACGAcggggcagagattaa                                                                                                                                    >  6:88366‑M2/1‑78 (MQ=255)                                                             acaGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGCCGTCAGAAACGAcggggcagagattaa                                                                                                                                    <  5:88366‑M2/93‑16 (MQ=255)                                                               aGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGa                                                                                       >  1:41081/1‑136 (MQ=255)                                                               aGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGa                                                                                       <  2:41081/136‑1 (MQ=255)                                                               aGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATATTGAGtttt                                                                           >  5:158564/1‑148 (MQ=255)                                                               aGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTa                                                                          <  4:148622/149‑1 (MQ=255)                                                                 tCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACt                                                                        <  1:120234/149‑1 (MQ=255)                                                                   aaaGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGt                                                                              <  1:129600/141‑1 (MQ=255)                                                                   aaaGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGt                                                                              >  2:129600/1‑141 (MQ=255)                                                                      gACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGAc                                                                   <  2:104792/149‑1 (MQ=255)                                                                         cTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATg                                                                >  3:57441/1‑149 (MQ=255)                                                                            tACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTTACGAATAGTGCGTTTTACTGc                                                                      <  1:186767/140‑1 (MQ=255)                                                                            tACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTTACGAATAGTGCGTTTTACTGc                                                                      >  2:186767/1‑140 (MQ=255)                                                                             aCGAAGATATTTTAGAGCTTTTCGACTAGTTGCTTTAATCTCTTCGTAGTAGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACACCCTGCTTTCAACTGCGATTAATTTAACGAATATTGCGTTTTACTGCGACATGTCa                                                             <  6:158564/148‑1 (MQ=255)                                                                               gAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCAtt                                                           >  6:124690/1‑148 (MQ=255)                                                                                     aTTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACaa                                                    <  2:132452/149‑1 (MQ=255)                                                                                      ttttAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAAt                                                   <  4:57441/149‑1 (MQ=255)                                                                                           gagCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAAt                                               <  7:3147/148‑1 (MQ=255)                                                                                                 ttCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAAt                                                                                              >  8:149571/1‑95 (MQ=255)                                                                                                 ttCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAAt                                                                                              <  7:149571/95‑1 (MQ=255)                                                                                                 ttCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAAt                                               <  2:57173/142‑1 (MQ=255)                                                                                                 ttCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAAt                                               >  1:57173/1‑142 (MQ=255)                                                                                                         ggAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCttt                                                                                                            <  4:11384/73‑1 (MQ=255)                                                                                                         ggAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCttt                                                                                                            >  3:11384/1‑73 (MQ=255)                                                                                                          gAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTaaaaaaa                               <  5:124690/149‑1 (MQ=255)                                                                                                             cTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGca                            >  5:111416/1‑149 (MQ=255)                                                                                                                  aTCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAAt                                               >  1:174003/1‑125 (MQ=255)                                                                                                                  aTCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAAt                                               <  2:174003/125‑1 (MQ=255)                                                                                                                     tctGCCCCGTCGTTTCTGACGGggcagagattaaagctcctggtcgaacagctctaaaatcgcttcgtacaggtctttgactgtgaaaccgttagcaggggtggtaaagatggtgtc                                                    <  5:127562‑M2/117‑96 (MQ=255)                                                                                                                     tctGCCCCGTCGTTTCTGACGGggcagagattaaagctcctggtcgaacagctctaaaatcgcttcgtacaggtctttgactgtgaaaccgttagcaggggtggtaaagatggtgtc                                                    >  6:127562‑M2/1‑22 (MQ=255)                                                                                                                     tctGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAAccccc                                                                                                                  <  7:4537/55‑1 (MQ=255)                                                                                                                     tctGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAAccccc                                                                                                                  >  8:4537/1‑55 (MQ=255)                                                                                                                       tGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACATTATg                     <  6:111416/146‑1 (MQ=255)                                                                                                                          cccGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACAtt                        <  4:147388/140‑1 (MQ=255)                                                                                                                          cccGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACAtt                        >  3:147388/1‑140 (MQ=255)                                                                                                                          cccGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGATTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACATTATGCAAAAt               >  7:5860/1‑149 (MQ=255)                                                                                                                            cgtcgtTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACATTATGCAAAAtt              >  5:47860/1‑148 (MQ=255)                                                                                                                                 tttCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCAt                                                            >  2:163184/1‑97 (MQ=255)                                                                                                                                 tttCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCAt                                                            <  1:163184/97‑1 (MQ=255)                                                                                                                                 tttCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACATTATGCAAAATTCATTAt        >  5:149216/1‑149 (MQ=255)                                                                                                                                       aCGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACATTATGCAAAATTCATTATCTAAtt  >  2:49532/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                  GGTATTCTGGGCACCATCGCTGGCGATGACACCATCTTTACCACCCCTGCTAACGGTTTCACAGTCAAAGACCTGTACGAAGCGATTTTAGAGCTGTTCGACCAGGAGCTTTAATCTCTGCCCCGTCGTTTCTGACGGCGGGGAAAATGTTGCTTATCCCTCTCAACCCCCTGCTTTCCCCTGCGATTAATTTAACGAATAGTGCGTTTTACTGCGACATGTCATTCACACAATGAATACATAAGGTAAAAAAAGCACATTATGCAAAATTCATTATCTAATT  >  NC_000913/3385060‑3385342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.