| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3846700 | 155 (1.790) | 3 (0.040) | 3/252 | NT | 1.9% | coding (468/1392 nt) | uhpT | hexose phosphate transporter |
| ? | NC_000913 | = 3846705 | 155 (1.870) | coding (463/1392 nt) | uhpT | hexose phosphate transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACCGACAATCAGCGCGATAATCGACGGGAAGATAAACATGCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3846548‑3846700‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgtCGTAAACGCGGGACATTCCTCGGTTTCTGGAATATTTCTCACAACCTTGGCGGTGCAGGCGCAGCAGGTGTGGCGCTGTTCGGGGCAAATTACCTGTTCGATGGCCATGTCATCGGCATGTTTATCTTCCCGTCGATTATCGCGCT < NC_000913/3846705‑3846560 AAACCGACAATCAGCGCGATAATCGACGGGAAGATAAACATGCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCC > 2:161019/1‑149AAACCGACAATCAGCGCGATAATCGACGGGAAGATAAACATGCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCC < 6:296394/149‑1 AACCGACAATCAGCGCGATAATCGACGGGAAGATAAACATGCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCG > 1:279057/1‑149 CGACAATCAGCGCGATAATCGACGGGAAGATAAACATGCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGT > 3:115954/1‑149 GCGCGATAATCGACGGGAAGATAAACATGCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTCGTAAACGC < 2:292811/149‑1 GCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCC < 8:136145/108‑1 GAAACCGAGGAATGTCCCGCGTTTACGACGCGGGACATTCCTCGGTTTCTGGAATATTTCTCACAACCTTGGCGGTGCAGGCGCAGCAGGTGTGGCGCTGTTCGGGGCAAATTACCTGTTCGAT > 3:320293/1‑124 GAAACCGAGGAATGTCCCGCGTTTACGACGCGGGACATTCCTCGGTTTCTGGAATATTTCTCACAACCTTGGCGGTGCAGGCGCAGCAGGTGTGGCGCTGTTCGGGGCAAATTACCTGTTCGAT < 4:320293/124‑1 CGCGTCGTAAACGCGGGACATTCCTCGGTTTCTGGAATATTTCTCACAACCTTGGCGGTGCAGGCGCAGCAGGTGTGGCGCTGTTCGGGGCAAATTACCTGTTCGATGGCCATGTCATCGGCATGTTTATCTTCCCGTCGTTTATCGCG > 3:202372/1‑149 GTCGTAAACGCGGGACATTCCTCGGTTTCTGGAATATTTCTCACAACCTTGGCGGTGCAGGCGCAGCAGGTGTGGCGCTGTTCGGGGCAAATTACCTGTTCGATGGCCATGTCATCGGCATGTTTATCTTCCCGTCGATTATCGCGCT > 3:246577/1‑148 AAACCGACAATCAGCGCGATAATCGACGGGAAGATAAACATGCCGATGACATGGCCATCGAACAGGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3846548‑3846700‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgtCGTAAACGCGGGACATTCCTCGGTTTCTGGAATATTTCTCACAACCTTGGCGGTGCAGGCGCAGCAGGTGTGGCGCTGTTCGGGGCAAATTACCTGTTCGATGGCCATGTCATCGGCATGTTTATCTTCCCGTCGATTATCGCGCT < NC_000913/3846705‑3846560 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |