New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3982351 =	105 (1.260)	3 (0.040)	3/248	NT	2.8%	intergenic (+79/‑24)	yifK/argX	putative APC family amino acid transporter/tRNA‑Arg
	?	NC_000913	3982397 =	112 (1.410)					noncoding (23/77 nt)	argX	tRNA‑Arg
Rejected: Frequency below/above cutoff threshold.

CAAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3982504‑3982351 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTGT  >  NC_000913/3982397‑3982544                                                                                                                                                                                                                                                                                                                CAAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGT                                                                                                                                                           <  5:80080/149‑1   AATCTTGTTCCTCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGG                                                                                                                                                         <  1:311997/149‑1   AATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTG                                                                                                                                                          >  4:62556/1‑148    cTCTTGATACGCCGTACTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCAGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTAAGCGCCGTTGCGGGGGTGGA                                                                                                                                                        <  4:307029/148‑1                  TATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGT                                                                                                                                                           <  7:311032/132‑1                  TATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGT                                                                                                                                                           >  8:311032/1‑132                                                                                                         GCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAA                                                   >  3:110860/1‑149                                                                                                             TATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGA                                                                             <  3:287234/119‑1                                                                                                             TATCCAGCAGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGA                                                                             >  4:287234/1‑119                                                                                                                                                       GATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAA                                                   >  3:163595/1‑103                                                                                                                                                       GATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAA                                                   <  4:163595/103‑1                                                                                                                                                         TAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTG   <  4:306401/149‑1                                                                                                                                                         TAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCACGTTCGAATCCTGTCGGGCGCGCCATTTATTCACGGCGCTTTAGCTGCGGTGGTAGTAATACCGCGTAACAATATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTG   >  2:391708/1‑149                                                                                                                                                          AGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTGT  >  3:258649/1‑149                                                                                                                                                                                                                                                                                                                CAAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3982504‑3982351 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTGT  >  NC_000913/3982397‑3982544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.