| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3769048 = | 103 (1.060) | 4 (0.040) | 4/256 | 11.5 | 3.6% | pseudogene (74/282 nt) | yibW | pseudogene, rhsA‑linked |
| ? | NC_000913 | 3769075 = | 114 (1.240) | pseudogene (101/282 nt) | yibW | pseudogene, rhsA‑linked | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGCATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3769199‑3769048‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcagTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT > NC_000913/3769075‑3769221 TTGCATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGACTCGAGGGCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCCTTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCG < 1:261623/148‑1 CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCA < 1:174861/148‑1 CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCA < 7:1229/148‑1 CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTAATGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCAG < 6:334323/149‑1 CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTCTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCA < 5:265040/148‑1 TCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCC > 1:287182/1‑140 TCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCC < 2:287182/140‑1 TAACTGACGGTACTAATCGTATGCCGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAG < 7:256556/102‑1 TAACTGACGGTACTAATCGTATGACGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAG > 8:256556/1‑102 TGACGGTACTAATCGTATGCCGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGT > 1:243816/1‑73 TGACGGTACTAATCGTATGCCGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGT < 2:243816/73‑1 CGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATA < 3:18036/149‑1 CGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATACTTGTTAAAACGCTTAAGGTCAGTCATTAGGAACACGATTCTGTTCCGAGGGTAGTATAACTGGATTATCTAATGACATGAAAAAATTAAATGAGTTAATA > 1:65067/1‑149 AGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTG > 3:239761/1‑62 AGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTG < 4:239761/62‑1 AGTTAAAATATGAACTTATAATCTAAATTGATTTTAAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACTTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT < 6:65517/149‑1 GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT > 7:206912/1‑148 GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATT < 2:278460/131‑1 GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATT > 1:278460/1‑131 GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTG < 7:364614/86‑1 GTTAATACAGGAACTTATAATCGCAATGGATTTTAAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATACTG > 8:364614/1‑86 TTGCATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3769199‑3769048‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcagTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT > NC_000913/3769075‑3769221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |