New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3676971 =	28 (0.950)	4 (0.140)	4/246	2.9	13.5%	coding (1380/2061 nt)	yhjG	putative inner membrane‑anchored periplasmic AsmA family protein
	?	NC_000913	3677025 =	25 (0.900)					coding (1326/2061 nt)	yhjG	putative inner membrane‑anchored periplasmic AsmA family protein
Rejected: Frequency below/above cutoff threshold.

TCCGCGTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGA  >  NC_000913/3676828‑3677095                                                                                                                                                |                                                                                                                             ctgcgggcaaagtgctgccttatgaccgcttcgaaaccgataaatgggacgttatggatgccgatgttcgcttcaaagggcggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAAtgct                                                                                                                         >  1:155105‑M1/144‑149 (MQ=255)                             tcttctGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGt                                                                                             >  7:81468/1‑149 (MQ=255)                               ttctGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGCGCCTGAATATCTGCCCGCCCCTGCATCTGCTTTTTATCGCCTTCCAGATGAATATTAGCCTCAATGCTGACGCCCGCCATGCCAAAATTCAGc                                                                                                >  6:18252/1‑144 (MQ=255)                               ttctGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGc                                                                                                <  5:18252/144‑1 (MQ=255)                                     aTCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGgcg                                                                                     >  8:23164/1‑149 (MQ=255)                                        aGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAg                                                                                  <  7:23164/149‑1 (MQ=255)                                             cacaTCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCa                                                                                                  >  6:50433/1‑128 (MQ=255)                                             cacaTCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCa                                                                                                  <  5:50433/128‑1 (MQ=255)                                                aTCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCAt                                                                          >  6:74604/1‑149 (MQ=255)                                                     tatggatgccgatgttcgcttcaaagggcggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCAtttt                                                                       <  1:64977‑M1/56‑1 (MQ=255)                                                     tatggatgccgatgttcgcttcaaagggcggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCAtttt                                                                       >  2:64977‑M1/92‑147 (MQ=255)                                                           gTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGgat                                                                >  4:19009/1‑148 (MQ=255)                                                              cTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCGTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGgatgat                                                             <  3:19009/148‑1 (MQ=255)                                                                   agtttcagtCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGt                                                       <  8:81468/149‑1 (MQ=255)                                                                                  ggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAAt                                        <  3:46552‑M1/87‑1 (MQ=255)                                                                                     tGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCgg                                     >  4:19492/1‑149 (MQ=255)                                                                                       attgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCa                                   >  4:46552‑M1/58‑149 (MQ=255)                                                                                       aaTATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGc                                    <  5:74604/148‑1 (MQ=255)                                                                                               cccgcccCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTg                           >  4:104221/1‑149 (MQ=255)                                                                                                    cccTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTa                                                      <  5:128122/117‑1 (MQ=255)                                                                                                    cccTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTa                                                      >  6:128122/1‑117 (MQ=255)                                                                                                       tGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCt                    >  7:65838/1‑148 (MQ=255)                                                                                                          aTCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAg                                  <  1:47362/131‑1 (MQ=255)                                                                                                          aTCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAg                                  >  2:47362/1‑131 (MQ=255)                                                                                                          aTCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTa                              >  1:105505/1‑135 (MQ=255)                                                                                                          aTCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTa                              <  2:105505/135‑1 (MQ=255)                                                                                                             ggCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGa                                                    <  2:74292/110‑1 (MQ=255)                                                                                                             ggCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGa                                                    >  1:74292/1‑110 (MQ=255)                                                                                                                     aTCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCtt     >  4:81659/1‑149 (MQ=255)                                                                                                                        gCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGgatgat                                                             <  7:38053/90‑1 (MQ=255)                                                                                                                        gCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGgatgat                                                             >  8:38053/1‑90 (MQ=255)                                                                                                                                         tCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGa  <  6:101782/132‑1 (MQ=255)                                                                                                                                         tCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGa  >  5:101782/1‑132 (MQ=255)                                                                                                                                                |                                                                                                                             TCCGCGTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGA  >  NC_000913/3676828‑3677095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.