New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1299499 =NA (NA)37 (1.380) 31/236 0.1 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 1300694 = 0 (0.000)intergenic (+1449/‑488) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

TAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTC  >  NC_000913/1300558‑1300841
                                                                                                                                        |                                                                                                                                                   
atctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATc                                                                                                                                         <  2:68200‑M2/13‑1 (MQ=255)
     ttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAAt                                                                                                                                      <  1:101941‑M2/16‑1 (MQ=255)
                    gcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCa                                                                                                                     <  1:25687‑M2/33‑1 (MQ=255)
                            tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCacta                                                                                                             >  7:48957‑M2/109‑149 (MQ=255)
                            tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCacta                                                                                                             >  4:125961‑M2/109‑149 (MQ=255)
                                        tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttggtcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCa                                                                                                                >  7:44174‑M2/97‑134 (MQ=255)
                                        tgtcggcgaagggaagttgatgactcatgatgaaccctgttatatggcgccagatgacaaacatgatctcatatcagcgacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCa                                                                                                                <  8:44174‑M2/38‑1 (MQ=255)
                                              cgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATc                                                                                                                                         <  3:33917‑M2/13‑1 (MQ=255)
                                              cgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATc                                                                                                                                         >  4:33917‑M2/91‑103 (MQ=255)
                                                   gtaagttgatgtctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCAGTTCACTACTGGAACTGTAATCAGAAAAGAt                                                                                      <  8:48957‑M2/64‑1 (MQ=255)
                                                    taagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATa                                                                                     <  7:64267‑M2/65‑1 (MQ=255)
                                                     aagttgatgactcatgatgcaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAg                                                                                    >  7:105370‑M2/84‑149 (MQ=255)
                                                     aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATtgt                                                                                                                        >  1:98573‑M2/84‑113 (MQ=255)
                                                     aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATtgt                                                                                                                        <  2:98573‑M2/30‑1 (MQ=255)
                                                             gactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCt                                                                             >  2:7369‑M2/76‑148 (MQ=255)
                                                                tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTaaa                                                                                                                                                 >  7:53882‑M2/73‑77 (MQ=255)
                                                                tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTaaa                                                                                                                                                 <  8:53882‑M2/5‑1 (MQ=255)
                                                                  atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCa                                                                                                                >  6:77867‑M2/71‑108 (MQ=255)
                                                                      tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAtct                                                                   <  3:125961‑M2/83‑1 (MQ=255)
                                                                              gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttga                                                           >  2:11166‑M2/59‑149 (MQ=255)
                                                                                 ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttgatt                                                         <  1:11166‑M2/93‑1 (MQ=255)
                                                                                        tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaattga                                                  >  1:48831‑M2/49‑148 (MQ=255)
                                                                                                acaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                         <  8:105370‑M2/109‑1 (MQ=255)
                                                                                                    acatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgtt                                      >  2:110767‑M2/37‑148 (MQ=255)
                                                                                                     catgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATAGAATTGAAAGAtgtttgtt                                      >  2:72017‑M2/36‑147 (MQ=255)
                                                                                                               tatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaatt                                                    <  3:26154‑M2/98‑1 (MQ=255)
                                                                                                               tatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaatt                                                    >  4:26154‑M2/26‑123 (MQ=255)
                                                                                                               tatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgtt                                      <  2:80177‑M2/112‑1 (MQ=255)
                                                                                                               tatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgtt                                      >  1:80177‑M2/26‑137 (MQ=255)
                                                                                                                 tcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGc                         >  7:78973‑M2/24‑148 (MQ=255)
                                                                                                                   agggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCaa                       <  1:7369‑M2/127‑1 (MQ=255)
                                                                                                                     ggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGc                     >  3:11626‑M2/20‑148 (MQ=255)
                                                                                                                     ggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGc                     >  2:135784‑M2/20‑148 (MQ=255)
                                                                                                                       acttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCtat                  <  1:110767‑M2/132‑1 (MQ=255)
                                                                                                                         ttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATgg                             >  4:59704‑M2/16‑136 (MQ=255)
                                                                                                                         ttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATgg                             <  3:59704‑M2/121‑1 (MQ=255)
                                                                                                                         ttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCta                   >  3:37374‑M2/16‑146 (MQ=255)
                                                                                                                               gcacattccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCt           >  4:76733‑M2/10‑148 (MQ=255)
                                                                                                                                  ccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATa       <  4:37374‑M2/143‑1 (MQ=255)
                                                                                                                                       cCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTAtt                                                              <  4:87181‑M2/88‑1 (MQ=255)
                                                                                                                                       cCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTAtt                                                              >  3:87181‑M2/2‑89 (MQ=255)
                                                                                                                                       cCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt   <  3:76733‑M2/147‑1 (MQ=255)
                                                                                                                                       cCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt   >  1:34607‑M2/2‑148 (MQ=255)
                                                                                                                                        cTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTc  >  5:54684/1‑148 (MQ=255)
                                                                                                                                        |                                                                                                                                                   
TAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTC  >  NC_000913/1300558‑1300841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.