Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 565,343 A→C T212T (ACT→ACG)  intD ← DLP12 prophage; putative phage integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913565,3430AC100.0% 477.5 / NA 133T212T (ACT→ACG) intDDLP12 prophage; putative phage integrase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (69/64);  total (69/64)

Only 100 of 133 total aligned reads displayed.

ACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCAGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTC  >  NC_000913/565199‑565487
                                                                                                                                                |                                                                                                                                                
 cGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGc                                                                                                                                             <  7:503146/149‑1 (MQ=255)
  gCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGcc                                                                                                                                            <  1:325544/149‑1 (MQ=255)
  gCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGc                                                                                                                                             >  3:236448/1‑148 (MQ=255)
   cAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCa                                                                                                                                           <  3:120229/149‑1 (MQ=255)
     acacTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAgc                                                                                                                                         <  6:258553/149‑1 (MQ=255)
            tcAGGCGGTATCGTTCAGCGCCACACCAATGGCGAGGTTTGATTTGCTCGCTTCTGGATTCACCCTGGCATGTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGTGTTTCTCAGATCCGTTGCCAGCGCaaag                                                                                                                                   <  6:293263/147‑2 (MQ=255)
               ggCGGGATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCAACCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTga                                                                                                                               <  1:83924/149‑1 (MQ=255)
                gCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTgac                                                                                                                              >  1:382887/1‑149 (MQ=255)
                gCGGTATAGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGATCTCTTCTGGATTCACCCAGGCAACTCGTAGCTGCATGTAGATTTGTTGAAATTCCAGATTTATTCTGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTgac                                                                                                                              >  4:232847/1‑149 (MQ=255)
                         ttCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGAttt                                                                                                                     >  1:129830/1‑149 (MQ=255)
                         ttCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGAtt                                                                                                                      >  3:502469/1‑148 (MQ=255)
                         ttCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGCCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGAttt                                                                                                                     >  3:145998/1‑149 (MQ=255)
                           cAGCGCCACACCAATGGCGCGGTTTGATTTGAGTTCTTCTGGATTCACCCAGGCAACGCGTCGCTGCATTGCTATTTGTTGCCATTCCAGATTTATGATGTGCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACATATTTCa                                                                                                                   <  4:305108/149‑1 (MQ=255)
                            aGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCa                                                                                                                   <  5:437271/148‑1 (MQ=255)
                            aGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAg                                                                                                                  >  4:10453/1‑149 (MQ=255)
                            aGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTACCAGCGCAAACTTGACGACAGATTTCa                                                                                                                   <  4:461894/148‑1 (MQ=255)
                               gcCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTgg                                                                                                               <  1:196892/149‑1 (MQ=255)
                                    acCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCgg                                                                                                          >  2:456027/1‑149 (MQ=255)
                                     ccAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCggg                                                                                                         <  8:401000/149‑1 (MQ=255)
                                     ccAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCggg                                                                                                         <  3:317806/149‑1 (MQ=255)
                                      cAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCgggg                                                                                                        <  8:362684/149‑1 (MQ=255)
                                      cAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCgggg                                                                                                        >  5:196912/1‑149 (MQ=255)
                                      cAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATCCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCgggg                                                                                                        >  2:357270/1‑149 (MQ=255)
                                                   tGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAAt                                                                                             >  8:148168/1‑147 (MQ=255)
                                                     aTTTGCTCTCTTCTGGATTCACCCAGGCAACTCGGCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCATACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAg                                                                                          <  1:106009/148‑1 (MQ=255)
                                                      tttGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGc                                                                                        >  2:417330/1‑149 (MQ=255)
                                                           tctctTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTg                                                                                                                <  1:238957/120‑1 (MQ=255)
                                                           tctctTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGtttt                                                                                   >  3:241186/1‑149 (MQ=255)
                                                           tctctTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGtttt                                                                                   >  8:530113/1‑149 (MQ=255)
                                                            ctctTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACtcatc                                                                                                <  8:331968/135‑1 (MQ=255)
                                                            ctctTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACtcatc                                                                                                >  7:331968/1‑135 (MQ=255)
                                                            ctctTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGtttt                                                                                   >  5:329933/1‑148 (MQ=255)
                                                             tcttctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGTCGTTTTGc                                                                                 >  4:257496/1‑149 (MQ=255)
                                                             tcttctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGc                                                                                 >  1:161110/1‑149 (MQ=255)
                                                             tcttctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGc                                                                                 >  7:14741/1‑149 (MQ=255)
                                                               ttctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACtcatc                                                                                                <  3:468166/132‑1 (MQ=255)
                                                               ttctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGc                                                                                 <  4:502469/147‑1 (MQ=255)
                                                                tctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGTCTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCa                                                                                                                   <  8:388707/112‑1 (MQ=255)
                                                                tctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCa                                                                                                                   >  7:388707/1‑112 (MQ=255)
                                                                 ctGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCt                                                                                <  5:517278/146‑1 (MQ=255)
                                                                         aCCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTtcctc                                                                           >  6:283570/1‑143 (MQ=255)
                                                                         aCCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTtcctc                                                                           <  5:283570/143‑1 (MQ=255)
                                                                         aCCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTc                                                                     >  8:322659/1‑149 (MQ=255)
                                                                         aCCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTc                                                                     >  2:167374/1‑149 (MQ=255)
                                                                          cccAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCtt                                                                               >  7:78564/1‑138 (MQ=255)
                                                                          cccAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTcc                                                                    <  7:420089/149‑1 (MQ=255)
                                                                          cccAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGAAGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTcc                                                                    <  7:121928/149‑1 (MQ=255)
                                                                           ccAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCa                                                                   <  7:211978/149‑1 (MQ=255)
                                                                                 aaCTCGGCGCTGCAGGGCGATTTGGTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATc                                                             <  4:436330/149‑1 (MQ=255)
                                                                                   cTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTg                                                           >  8:496949/1‑149 (MQ=255)
                                                                                   cTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTg                                                           <  4:53160/149‑1 (MQ=255)
                                                                                      gtcgCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGAc                                                         <  1:32339/148‑1 (MQ=255)
                                                                                       tcgCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTc                                                       <  4:319122/149‑1 (MQ=255)
                                                                                         gCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGc                                                     <  6:196912/149‑1 (MQ=255)
                                                                                         gCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGc                                                     <  2:161110/149‑1 (MQ=255)
                                                                                          cTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGc                                                     <  4:246933/148‑1 (MQ=255)
                                                                                          cTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGc                                                     >  3:239016/1‑148 (MQ=255)
                                                                                          cTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGc                                                     <  4:239016/148‑1 (MQ=255)
                                                                                          cTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCt                                                    >  3:77517/1‑149 (MQ=255)
                                                                                           tGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGACAGCGCAAACTTGACGACAGATTTCAGTGGTTCGTGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCtt                                                   >  7:497981/1‑149 (MQ=255)
                                                                                             cATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGt                                                 >  7:57770/1‑149 (MQ=255)
                                                                                             cATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGt                                                 >  2:476671/1‑149 (MQ=255)
                                                                                                gTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTc                                              >  3:448246/1‑149 (MQ=255)
                                                                                                 tCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCt                                             <  8:2155/149‑1 (MQ=255)
                                                                                                 tCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCt                                             <  8:495104/149‑1 (MQ=255)
                                                                                                 tCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGAGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCt                                             >  8:169150/1‑149 (MQ=255)
                                                                                                 tCGATTTGTTGCCATCCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCt                                             <  1:357270/149‑1 (MQ=255)
                                                                                                   gATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGa                                           >  1:7158/1‑149 (MQ=255)
                                                                                                   gATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGa                                           >  5:381618/1‑149 (MQ=255)
                                                                                                   gATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGa                                           <  6:223471/149‑1 (MQ=255)
                                                                                                        gttgCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGc                                       <  1:476671/148‑1 (MQ=255)
                                                                                                         ttgCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTg                                     <  1:456027/149‑1 (MQ=255)
                                                                                                           gCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTGCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGCCCGCTgg                                    >  3:269594/1‑148 (MQ=255)
                                                                                                           gCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTgg                                    >  8:164490/1‑148 (MQ=255)
                                                                                                           gCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTgg                                    >  1:361217/1‑148 (MQ=255)
                                                                                                                tCCAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCtt                              >  4:324114/1‑149 (MQ=255)
                                                                                                                  cAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTtga                            <  6:381618/149‑1 (MQ=255)
                                                                                                                  cAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTtga                            >  7:177246/1‑149 (MQ=255)
                                                                                                                  cAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTtga                            >  7:181654/1‑149 (MQ=255)
                                                                                                                  cAGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTtg                             <  4:145998/148‑1 (MQ=255)
                                                                                                                   aGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTtgat                           <  1:417330/149‑1 (MQ=255)
                                                                                                                   aGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTtgat                           >  1:511236/1‑149 (MQ=255)
                                                                                                                   aGATTTATGATGTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTtgat                           <  4:464749/149‑1 (MQ=255)
                                                                                                                          tgatgTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATc                                <  7:106915/137‑1 (MQ=255)
                                                                                                                          tgatgTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATc                                >  8:106915/1‑137 (MQ=255)
                                                                                                                          tgatgTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGgc                    <  4:72718/149‑1 (MQ=255)
                                                                                                                              gTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCt                                             >  4:471416/1‑120 (MQ=255)
                                                                                                                              gTTCGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCt                                             <  3:471416/120‑1 (MQ=255)
                                                                                                                                 cGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTg                                     >  5:161968/1‑125 (MQ=255)
                                                                                                                                 cGACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCtttt              <  3:357542/148‑1 (MQ=255)
                                                                                                                                  gACTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTc            <  3:257496/149‑1 (MQ=255)
                                                                                                                                   aCTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTcc           <  7:496949/149‑1 (MQ=255)
                                                                                                                                    cTTTCTCAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCa          <  2:348432/149‑1 (MQ=255)
                                                                                                                                       tctcAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGc        >  3:146456/1‑148 (MQ=255)
                                                                                                                                         tcAGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGAACTCATCAATAAGGCGTTTTGATTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCAc     >  4:20286/1‑149 (MQ=255)
                                                                                                                                         tcAGACCCGTAGCCACCGCAAACTACACGACAGATTACAGTGGTTAGGGGAACACATCAATAAGGCGTTTTGCTTCCTCCTTTTCAAGCCATCTGACTCGCTTATTTCAGACCGCTGGTATAATGATGACAGGCGCTTTTTCAAGCCAc     >  4:190273/1‑149 (MQ=255)
                                                                                                                                           aGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCa          >  2:201041/1‑142 (MQ=255)
                                                                                                                                           aGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACtt   <  2:382887/149‑1 (MQ=255)
                                                                                                                                           aGACCCGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTGTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACtt   >  3:340971/1‑149 (MQ=255)
                                                                                                                                            gACCCGTTGCCAGCGCAAACTTGACGACAGATTTCCGTGGTTCGGGGCACTCCTCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCAGCTGACTCGCTTGGGTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTc  <  6:102189/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                
ACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCAGTTGCCAGCGCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTC  >  NC_000913/565199‑565487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑