New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994980 (0.000)71 (0.870) 54/242 0.6 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 = 1300693 NA (NA)noncoding (1195/1195 nt) IS5 repeat region

TCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG  >  NC_000913/1299352‑1299646
                                                                                                                                                  |                                                                                                                                                    
tctcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAg                                                                                                                                                     >  8:145821‑M1/1‑147 (MQ=255)
tctcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTAACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAg                                                                                                                                                     >  6:125480‑M1/1‑147 (MQ=255)
    aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaagg                                                                                                                                                >  2:115595‑M1/1‑143 (MQ=255)
    aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaa                                                                                                                                                  <  3:163602‑M1/147‑5 (MQ=255)
    aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaa                                                                                                                                                  <  5:49266‑M1/147‑5 (MQ=255)
    aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCGGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAgtaagg                                                                                                                                                >  7:317754‑M1/1‑143 (MQ=255)
      aTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtg                                                                                                                                              <  6:72271‑M1/149‑9 (MQ=255)
       ttACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgc                                                                                                                                             <  4:233567‑M1/149‑10 (MQ=255)
                gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagc                                                                                                                                     <  1:151690‑M1/148‑18 (MQ=255)
                 ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggacggtgcgaataagcgg                                                                                                                                   <  5:333885‑M1/149‑20 (MQ=255)
                   ataAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCGCTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggg                                                                                                                                  >  7:115422‑M1/1‑128 (MQ=255)
                    taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaag                                                                                                                                                 <  8:187862‑M1/132‑6 (MQ=255)
                    taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaag                                                                                                                                                 >  7:187862‑M1/1‑127 (MQ=255)
                          tttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagaggggaaattct                                                                                                                          >  8:74413‑M1/1‑121 (MQ=255)
                           ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattctt                                                                                                                         >  8:4239‑M1/1‑120 (MQ=255)
                              cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaa                                                                                                                                                  >  5:54759‑M1/1‑117 (MQ=255)
                              cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaa                                                                                                                                                  <  6:54759‑M1/121‑5 (MQ=255)
                               ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcg                                                                                                                     >  4:7814‑M1/1‑116 (MQ=255)
                                 aaCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggc                                                                                                                   >  7:111278‑M1/1‑114 (MQ=255)
                                            ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATCGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca                                                                                                        >  2:31222‑M1/1‑103 (MQ=255)
                                               aCCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt                                                                                                     >  4:278016‑M1/1‑100 (MQ=255)
                                                   tcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt                                                                                                 <  3:7814‑M1/149‑54 (MQ=255)
                                                        ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc                                                                                            <  7:4239‑M1/149‑59 (MQ=255)
                                                        ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                                                                             <  2:223292‑M1/148‑58 (MQ=255)
                                                        ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                                                                             >  1:223292‑M1/1‑91 (MQ=255)
                                                          aTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttca                                                                                           <  1:376196‑M1/148‑60 (MQ=255)
                                                                gCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga                                                                                    <  5:125480‑M1/149‑67 (MQ=255)
                                                                gCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga                                                                                    <  3:278016‑M1/149‑67 (MQ=255)
                                                                gCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt                                                                                      >  7:188945‑M1/1‑83 (MQ=255)
                                                                         aaatCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaag                                                                                                                                                 >  3:167903‑M1/2‑74 (MQ=255)
                                                                         aaatCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaag                                                                                                                                                 <  4:167903‑M1/78‑6 (MQ=255)
                                                                              cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttc                                                                                                                        <  1:135724‑M1/99‑31 (MQ=255)
                                                                              cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttc                                                                                                                        >  2:135724‑M1/1‑69 (MQ=255)
                                                                               tGGGCTTGCTGAAGAATAGTTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc                                                                     >  8:321393‑M1/1‑68 (MQ=255)
                                                                                gggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgtgaataagcggggaaattattctcggctgaatcagtcatttcatttcttcatgtttgagccgattttttctaac                                                                    >  8:116627‑M1/1‑67 (MQ=255)
                                                                                      gCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat                                                              >  1:277490‑M1/1‑61 (MQ=255)
                                                                                      gCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt                                                                            >  2:289895‑M1/1‑61 (MQ=255)
                                                                                      gCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt                                                                            <  1:289895‑M1/135‑75 (MQ=255)
                                                                                       cTGAAGAATAATTGAAATGATATTATTAATTCCGCTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat                                                              <  8:115422‑M1/148‑89 (MQ=255)
                                                                                          aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt                                                                                      >  5:14088‑M1/1‑57 (MQ=255)
                                                                                          aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt                                                                                      <  6:14088‑M1/121‑65 (MQ=255)
                                                                                          aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgac                                                                                                               <  2:3310‑M1/96‑40 (MQ=255)
                                                                                          aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgac                                                                                                               >  1:3310‑M1/1‑57 (MQ=255)
                                                                                           cgatgtattgaaatGTTATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                         <  3:328378‑M1/143‑94 (MQ=255)
                                                                                           agaaTAGTTGAAATGATATTATTAATTCTACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                         <  7:321393‑M1/149‑94 (MQ=255)
                                                                                               taatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAACGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgaggcgattttttctcccgtaaatgccttgaat                                                     <  6:155310‑M1/149‑98 (MQ=255)
                                                                                                  ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcag                                                  >  3:309440‑M1/1‑49 (MQ=255)
                                                                                                  ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                         >  4:328378‑M1/1‑49 (MQ=255)
                                                                                                     aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcct                                               <  1:31222‑M1/149‑104 (MQ=255)
                                                                                                     aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcc                                                >  1:98883‑M1/1‑46 (MQ=255)
                                                                                                      aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagccta                                              <  7:145821‑M1/149‑105 (MQ=255)
                                                                                                             ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttttctcccgtaaatgcctt                                                        <  5:201999‑M1/132‑95 (MQ=255)
                                                                                                             ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttttctcccgtaaatgcctt                                                        >  6:201999‑M1/1‑38 (MQ=255)
                                                                                                             ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagac                                       >  4:288787‑M1/1‑38 (MQ=255)
                                                                                                             ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcg                                                                                                                                    >  6:184321‑M1/1‑38 (MQ=255)
                                                                                                             ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcg                                                                                                                                    <  5:184321‑M1/56‑19 (MQ=255)
                                                                                                              tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttaga                                        >  1:315719‑M1/1‑37 (MQ=255)
                                                                                                              tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttaga                                        <  2:315719‑M1/147‑111 (MQ=255)
                                                                                                              tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat                                                                                                  <  8:300432‑M1/89‑53 (MQ=255)
                                                                                                              tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat                                                                                                  >  7:300432‑M1/1‑37 (MQ=255)
                                                                                                               attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccg                                     >  5:76113‑M1/1‑36 (MQ=255)
                                                                                                                ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgt                                    >  2:402480‑M1/1‑35 (MQ=255)
                                                                                                                ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat                                                                                                  >  3:243938‑M1/1‑35 (MQ=255)
                                                                                                                ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat                                                                                                  <  4:243938‑M1/87‑53 (MQ=255)
                                                                                                                   aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataatcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgcgccgattttttctcccgtaaatgccttgcatcagccgatttagaccggttc                                 >  8:156809‑M1/1‑32 (MQ=255)
                                                                                                                   aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttc                                 >  5:191962‑M1/1‑32 (MQ=255)
                                                                                                                       cACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcg                             <  8:111278‑M1/149‑122 (MQ=255)
                                                                                                                       cACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcg                             >  7:315288‑M1/1‑28 (MQ=255)
                                                                                                                       cACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttc                              <  1:115595‑M1/148‑121 (MQ=255)
                                                                                                                        aCTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgc                            <  8:188945‑M1/149‑123 (MQ=255)
                                                                                                                         cTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgc                            >  7:118585‑M1/1‑26 (MQ=255)
                                                                                                                          tGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcca                          >  3:122282‑M1/1‑25 (MQ=255)
                                                                                                                                  gTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggc                  <  2:277490‑M1/149‑133 (MQ=255)
                                                                                                                                  gTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaagg                   <  7:74413‑M1/148‑132 (MQ=255)
                                                                                                                                     gagGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgt                <  8:118585‑M1/148‑135 (MQ=255)
                                                                                                                                     gagGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgt                >  5:355403‑M1/1‑14 (MQ=255)
                                                                                                                                      agGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtta              >  8:196842‑M1/1‑13 (MQ=255)
                                                                                                                                      agGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtta              <  4:122282‑M1/149‑137 (MQ=255)
                                                                                                                                               cTAAggaaggtgcgaatcagcggggaaattctgatcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagt      <  8:317754‑M1/148‑145 (MQ=255)
                                                                                                                                               cTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtt     >  7:127790‑M1/1‑4 (MQ=255)
                                                                                                                                                  aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttttt  <  2:7296‑M1/149‑149 (MQ=255)
                                                                                                                                                  aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttttt  <  5:376646‑M1/149‑149 (MQ=255)
                                                                                                                                                  aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttt   >  8:301167‑M1/1‑1 (MQ=255)
                                                                                                                                                  aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttt   <  3:170123‑M1/148‑148 (MQ=255)
                                                                                                                                                  aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagccta                                              <  6:145051‑M1/105‑105 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
TCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG  >  NC_000913/1299352‑1299646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.