mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.0% | 162.8 / 62.4 | 96 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 25 (0.280) | 23 (0.290) | 21/234 | 4.0 | 47.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 29 (0.370) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 95 (1.060) | 19 (0.230) | 18/248 | 5.1 | 15.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 113 (1.350) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 97 (1.080) | 11 (0.130) | 11/248 | 7.2 | 9.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 113 (1.350) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3783607 = | 120 (1.340) | 6 (0.070) | 6/250 | 9.4 | 5.1% | coding (55/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| ? | NC_000913 | 3783630 = | 112 (1.330) | coding (32/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) | |||||
| * | ? | NC_000913 | 1806395 = | 69 (0.770) | 6 (0.070) | 6/254 | 9.5 | 9.3% | coding (26/930 nt) | pfkB | 6‑phosphofructokinase II |
| ? | NC_000913 | 1806419 = | 51 (0.600) | coding (50/930 nt) | pfkB | 6‑phosphofructokinase II | |||||
| * | ? | NC_000913 | = 1712803 | 117 (1.300) | 5 (0.060) | 5/248 | 9.9 | 4.4% | coding (35/1503 nt) | dtpA | dipeptide and tripeptide permease A |
| ? | NC_000913 | = 1712811 | 108 (1.290) | coding (43/1503 nt) | dtpA | dipeptide and tripeptide permease A | |||||
| * | ? | NC_000913 | = 3967703 | 113 (1.260) | 4 (0.050) | 4/242 | 10.3 | 3.9% | intergenic (+27/‑213) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | NC_000913 | = 3967707 | 95 (1.160) | intergenic (+31/‑209) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | 4621634 = | 101 (1.130) | 4 (0.050) | 4/246 | 10.4 | 4.0% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 98 (1.180) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | = 3986614 | 131 (1.460) | 4 (0.050) | 4/244 | 10.4 | 3.1% | noncoding (183/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913 | = 3986622 | 129 (1.570) | noncoding (191/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913 | = 2527064 | 100 (1.110) | 4 (0.050) | 4/246 | 10.4 | 4.4% | coding (119/999 nt) | yfeH | putative inorganic ion transporter |
| ? | NC_000913 | = 2527126 | 82 (0.990) | coding (181/999 nt) | yfeH | putative inorganic ion transporter | |||||