breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT36.3% 234.7 / 226.2 246intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009133,941,8910TA23.1% 65.4 / 21.7 39noncoding (84/1542 nt)rrsC16S ribosomal RNA of rrnC operon
*NC_0009133,941,8920TA23.1% 69.1 / 23.0 39noncoding (85/1542 nt)rrsC16S ribosomal RNA of rrnC operon
*NC_0009133,949,2080AC21.4% 400.9 / 127.6 207A254A (GCT→GCGyifBmagnesium chelatase family protein and putative transcriptional regulator

Marginal new junction evidence (lowest skew 10 of 228 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3548549174 (0.870)28 (0.170)
+23 bp
19/252 14.8 16.3% coding (1522/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
?NC_000913 3548573 = 166 (0.830)coding (1498/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
* ? NC_000913 = 225281NA (NA)21 (0.110) 12/288 20.7 NA noncoding (1511/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 225293 NA (NA)noncoding (1523/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 274620 =NA (NA)22 (0.120) 10/280 21.6 NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 3870359 =239 (1.200)11 (0.060) 10/284 21.8 4.6% coding (983/1065 nt) cbrA colicin M resistance protein; FAD‑binding protein, putative oxidoreductase
?NC_000913 3870387 = 230 (1.210)coding (1011/1065 nt) cbrA colicin M resistance protein; FAD‑binding protein, putative oxidoreductase
* ? NC_000913 = 381669NA (NA)11 (0.060) 10/284 21.8 NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 = 4053529193 (1.010)9 (0.050) 9/284 22.5 4.5% intergenic (+111/+118) hemN/yshB coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein
?NC_000913 = 4053613 NA (NA)noncoding (84/84 nt) REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 315852NA (NA)10 (0.050) 9/290 22.9 NA noncoding (624/1255 nt) IS3 repeat region
?NC_000913 = 315875 NA (NA)noncoding (647/1255 nt) IS3 repeat region
* ? NC_000913 438164 =180 (0.900)13 (0.070) 9/292 23.0 6.7% intergenic (‑29/+151) yajO/dxs 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring
?NC_000913 438263 = 187 (0.960)intergenic (‑128/+52) yajO/dxs 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring
* ? NC_000913 = 4457184214 (1.070)9 (0.050) 8/288 23.5 4.2% intergenic (+26/+130) mpl/yjgA UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein
?NC_000913 = 4457224 NA (NA)noncoding (40/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3423376 =180 (0.900)28 (0.140) 8/294 23.8 13.2% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4213162 190 (0.960)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein