New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3943635	NA (NA)	7 (0.200)	7/226	2.6	33.1%	intergenic (+125/‑69)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA of rrnC operon
	?	NC_000913	= 4037446	15 (0.410)					intergenic (+111/‑73)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA of rrnA operon

GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC  >  NC_000913/4037312‑4037594                                                                                                                                       |                                                                                                                                                     gTTCGATCCCGCATAGCTCCGCCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                                                                        >  3:88864‑M2/1‑135 (MQ=255)                             tGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat                                                                                                              <  7:22680/147‑1 (MQ=33)                                         ataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaag                                                                                                 >  1:129975/1‑148 (MQ=37)                                             aaaaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt                                                                                                       <  4:18118/138‑1 (MQ=34)                                                           tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGa                                                                              <  6:61343/149‑1 (MQ=37)                                                             tACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAg                                                                             <  2:129975/148‑1 (MQ=37)                                                              aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaa                                                                                                       <  5:88791‑M2/121‑48 (MQ=255)                                                              aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaa                                                                                                       >  6:88791‑M2/1‑74 (MQ=255)                                                              aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGt                                                                           >  7:41799/1‑149 (MQ=37)                                                               ccTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGt                                                                           >  7:16927/1‑148 (MQ=37)                                                                cTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                                                                                     <  3:16470/121‑1 (MQ=35)                                                                cTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                                                                                     >  4:16470/1‑121 (MQ=35)                                                                   cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                                                      <  8:16927/149‑1 (MQ=37)                                                                        gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                                                      <  3:51177/144‑1 (MQ=37)                                                                        gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                                                      >  4:51177/1‑144 (MQ=37)                                                                              tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga                                                                                                            <  7:10920/100‑1 (MQ=33)                                                                              tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga                                                                                                            >  8:10920/1‑100 (MQ=33)                                                                                     ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                                    <  8:41799/149‑1 (MQ=11)                                                                                      tttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgt                                                                                                                                             <  2:169091‑M2/59‑10 (MQ=255)                                                                                      tttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgt                                                                                                                                             >  1:169091‑M2/1‑50 (MQ=255)                                                                                                                            acacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccaga                                                                                                               >  2:195214‑M2/1‑12 (MQ=255)                                                                                                                            acacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccaga                                                                                                               <  1:195214‑M2/51‑40 (MQ=255)                                                                                                                                 gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctag            >  2:69735‑M2/1‑7 (MQ=255)                                                                                                                                 gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctag            <  1:69735‑M2/145‑139 (MQ=255)                                                                                                                                 gAACAACtttcgttgttcagtgtttcaattttcagcttgatcca                                                                                                                 <  7:155702‑M2/44‑38 (MQ=255)                                                                                                                                 gAACAACtttcgttgttcagtgtttcaattttcagcttgatcca                                                                                                                 >  8:155702‑M2/1‑7 (MQ=255)                                                                                                                                  aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttca                                         >  6:171275‑M2/1‑6 (MQ=255)                                                                                                                                  aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttca                                         <  5:171275‑M2/115‑110 (MQ=255)                                                                                                                                  aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacataacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggat       <  7:132030‑M2/149‑144 (MQ=255)                                                                                                                                    caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaac                                <  7:38274‑M2/122‑119 (MQ=255)                                                                                                                                    caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaac                                >  8:38274‑M2/1‑4 (MQ=255)                                                                                                                                     aactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctagg           <  6:168006‑M2/142‑140 (MQ=255)                                                                                                                                     aactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctagg           >  5:168006‑M2/1‑3 (MQ=255)                                                                                                                                       ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa  >  5:3912‑M2/1‑1 (MQ=255)                                                                                                                                       |                                                                                                                                                     GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC  >  NC_000913/4037312‑4037594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.