| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3220891 | NA (NA) | 3 (0.040) | 3/240 | NT | NA | noncoding (12/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3220898 | NA (NA) | noncoding (19/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3220732‑3220891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGCGTTA < NC_000913/3220898‑3220753 ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAA > 2:139748/1‑149ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAA > 2:219128/1‑149 GTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATC < 3:124361/147‑1 GGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG > 6:224882/1‑149 ACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATT < 5:224882/149‑1 GTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATG > 3:95529/1‑126 GTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATG < 4:95529/126‑1 TCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTT < 6:354263/149‑1 GGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGCTCACCAGTTCACACTGTTCAATGGTCAGTGGCAGTGGCGGTTCAATGCGGATCGTTTTG > 5:98184/1‑149 GGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTG < 2:363073/149‑1 GGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGACCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTG < 8:281743/149‑1 GATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGG > 8:43352/1‑149 ATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGC < 6:148994/149‑1 ATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATG < 3:105377/111‑1 ATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATG > 4:105377/1‑111 CGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAGTGCGGATCGTTTTGGCGTTA < 5:285827/149‑1 ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3220732‑3220891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGCGTTA < NC_000913/3220898‑3220753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |