New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1390464	39 (0.450)	4 (0.050)	4/250	NT	8.1%	coding (135/729 nt)	mpaA	murein peptide amidase A
	?	NC_000913	= 1390483	54 (0.660)					coding (116/729 nt)	mpaA	murein peptide amidase A

CATTAGCATTGGCCCGTAACCCCAACTGGCAGCCGTCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCGGGTTACGGTCATGATCGTCTCTGGT  >  NC_000913/1390319‑1390611                                                                                                                                                  |                                                                                                                                                    cATTAGCATTGGCCCGTAACCCCAACTGGCAGCCGTCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGccagccag                                                                                                                                                   >  4:48499/1‑148 (MQ=255)   ttAGCAAGGGCCCGTAACCCCAACTGGCAGCCGTCAGGCTTCACACACAGCACCACATGCTGACGGCGCAAAGAAGGTGGCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAAt                                                                                                                                                <  2:130914/149‑1 (MQ=255)       cATTGGCCCGTAACCCCAACTGGCAGCCGTCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCaaa                                                                                                                                            <  5:51086/149‑1 (MQ=255)                    ccccAACTGGCAGCCGTCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGCAGGTGTCAACTTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAACCCACTGTAGCgg                                                                                                                                <  1:242870‑M2/148‑3 (MQ=255)                    ccccAACTGGCAGCCGTCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCggc                                                                                                                               >  3:48499‑M2/1‑146 (MQ=255)                     cccAACTGGCAGCCGTCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCggct                                                                                                                              <  5:207529‑M2/149‑5 (MQ=255)                                    tCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCgcgaaagtggtttgattctggctggcactca                                                                                                                      <  5:162687‑M1/142‑32 (MQ=255)                                    tCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCgcgaaagtggtttgattctggctggcactca                                                                                                                      >  6:162687‑M1/1‑111 (MQ=255)                                       ggATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGaaa                                                                                                            <  8:40648/149‑1 (MQ=255)                                        gATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAAt                                                                                                                                                >  6:238695/1‑112 (MQ=255)                                        gATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAAt                                                                                                                                                <  5:238695/112‑1 (MQ=255)                                        gATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAAc                                                                                                           >  8:147707/1‑149 (MQ=255)                                            cacacacaGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAg                                                                                                        <  6:207529/148‑1 (MQ=255)                                             acacacaGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGa                                                                                                       <  7:147707/148‑1 (MQ=255)                                             acacacaGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGa                                                                                                       <  7:64915/148‑1 (MQ=255)                                             acacacaGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGAt                                                                                                      >  7:156288/1‑149 (MQ=255)                                             acacacaGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGAt                                                                                                      >  4:231297/1‑149 (MQ=255)                                             acacacaGCACCACATGATGACGGCGCAAAGAAGGGGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGa                                                                                                       <  1:196586/148‑1 (MQ=255)                                              cacacaGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGAtt                                                                                                     <  8:156288/149‑1 (MQ=255)                                               acacaGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGAtt                                                                                                     >  7:56169/1‑148 (MQ=255)                                                  caGCACCACAGGATGTCGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACCGGAGAGCGTGACGACCGAAGAGTTGTCATCACCGTGAGGGCCAGCCAGACTCAAACCACTTGCGCGGCTGGCTGCAGGGGCAGGAAACCCGATTAACg                                                                                                 <  2:40158/149‑1 (MQ=255)                                                        cacaTGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCgcgaaagtggtttgattctggctggca                                                                                                                          <  4:356283‑M1/118‑28 (MQ=255)                                                        cacaTGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCgcgaaagtggtttgattctggctggca                                                                                                                          >  3:356283‑M1/1‑91 (MQ=255)                                                        cacaTGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGgcgcgc                                                                                           >  5:77479/1‑149 (MQ=255)                                                          caTGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGcc                                                                                          >  8:39133/1‑148 (MQ=255)                                                           atgatgACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGCCCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGccc                                                                                         >  6:122045/1‑148 (MQ=255)                                                                    gcgcAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAAc                                                                               <  6:77479/149‑1 (MQ=255)                                                                        aaaGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTcc                                                                           >  5:122632/1‑149 (MQ=255)                                                                                 gtCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAAtgttc                                                                  >  4:4440/1‑149 (MQ=255)                                                                                    aaCGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAAtgttctgt                                                               >  8:197522/1‑149 (MQ=255)                                                                                    aaCGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAAtgttct                                                                 <  4:218980/147‑1 (MQ=255)                                                                                    aaCGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAAtgttct                                                                 >  3:218980/1‑147 (MQ=255)                                                                                        tCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCg                                                           >  1:216845/1‑149 (MQ=255)                                                                                          cGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCggg                                                         >  8:346869/1‑149 (MQ=255)                                                                                           gCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCaa                                                                                       >  1:46676/1‑118 (MQ=255)                                                                                           gCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCaa                                                                                       <  2:46676/118‑1 (MQ=255)                                                                                           gCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGc                                                        >  4:159182/1‑149 (MQ=255)                                                                                            cAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCTGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCg                                                       <  8:330517/149‑1 (MQ=255)                                                                                             agagCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCgg                                                      <  3:231297/149‑1 (MQ=255)                                                                                               agCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGaa                                                    <  7:161520/149‑1 (MQ=255)                                                                                                      gagaGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGcgcc                                             >  2:372519/1‑149 (MQ=255)                                                                                                        gagCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGcgccgc                                           <  8:56169/149‑1 (MQ=255)                                                                                                         agCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCcgcg                                          >  5:140720/1‑149 (MQ=255)                                                                                                            gTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCCGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGACATGCGCCGCGTTc                                       >  4:204177/1‑149 (MQ=255)                                                                                                                  acCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGcgcg                                 >  6:378292/1‑149 (MQ=255)                                                                                                                    cGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTg                               >  6:260340/1‑149 (MQ=255)                                                                                                                         agTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCgg                          <  7:39133/149‑1 (MQ=255)                                                                                                                             ttCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCGGGTTa                      >  8:333709/1‑149 (MQ=255)                                                                                                                                atcaCCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCGGGTTACgg                   >  4:237029/1‑149 (MQ=255)                                                                                                                                       tGAGTGCCAGCCAGAATCAAACCACTTTCGCggctggcactcacggtgatgaaaactcttcggtcgtcacgctctcctgtgctctgcggacgttgacaccttctttgcgccgtcatcatgtggtgctgtgtgtgaatcctga                   >  6:162687‑M2/1‑31 (MQ=255)                                                                                                                                       tGAGTGCCAGCCAGAATCAAACCACTTTCGCggctggcactcacggtgatgaaaactcttcggtcgtcacgctctcctgtgctctgcggacgttgacaccttctttgcgccgtcatcatgtggtgctgtgtgtgaatcctga                   <  5:162687‑M2/142‑112 (MQ=255)                                                                                                                                           tGCCAGCCAGAATCAAACCACTTTCGCggctggcactcacggtgatgaaaactcttcggtcgtcacgctctcctgtgctctgcggacgttgacaccttctttgcgccgtcatcatgtg                                       >  3:356283‑M2/1‑27 (MQ=255)                                                                                                                                           tGCCAGCCAGAATCAAACCACTTTCGCggctggcactcacggtgatgaaaactcttcggtcgtcacgctctcctgtgctctgcggacgttgacaccttctttgcgccgtcatcatgtg                                       <  4:356283‑M2/118‑92 (MQ=255)                                                                                                                                             ccagccagAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCGGGTTACGGTCATGATCGtctc      >  1:21212/1‑149 (MQ=255)                                                                                                                                               aGCCgcgaaagtggtttgattctggctggcactcacggtgatgaaaactcttcggtcgtcacgctctcctgtgctctgcggacgttgacaccttctttgcgccgtcatcatgtggtgctgtgtgtgaatcctgacggctgccagttggg    <  5:207529‑M1/149‑146 (MQ=255)                                                                                                                                                gccagAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCAGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCGGGTTACGGTCATGATCGTCTCTgg   >  7:199011/1‑149 (MQ=255)                                                                                                                                                gCCgcgaaagtggtttgattctggctggcactcacggtgatgaaaactcttcggtcgtcacgctctcctgtgctctgcggacgttgacaccttctttgcgccgtcatcatgtggtgctgtgtgtgaatcctgacggctgccagttgggg   >  3:48499‑M1/1‑3 (MQ=255)                                                                                                                                                 ccgctacagtgggttgattctggctggcactcacggtgatgaaaactcttcggtcgtcacgctctcctgtgctctgcggaagttgacacctgctttgcgccgtcatcatgtggtgctgtgtgtgaatcctgacggctgccagttgggg   <  1:242870‑M1/148‑147 (MQ=255)                                                                                                                                                 ccagAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCGGGTTACGGTCATGATCGTCTCTGGt  <  6:122632/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CATTAGCATTGGCCCGTAACCCCAACTGGCAGCCGTCAGGATTCACACACAGCACCACATGATGACGGCGCAAAGAAGGTGTCAACGTCCGCAGAGCACAGGAGAGCGTGACGACCGAAGAGTTTTCATCACCGTGAGTGCCAGCCAGAATCAAACCACTTTCGCGGCTGGCTGCAGGGGCAGGAAACCAGATTAACGGCGCGCCCAATAATGAACGTCCGTAATGTTCTGTTCCGGGCGGAAATGCGCCGCGTTCGGCGCGTGGGCGGGTTACGGTCATGATCGTCTCTGGT  >  NC_000913/1390319‑1390611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.