New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3906213	58 (1.710)	5 (0.150)	5/248	3.1	8.4%	coding (355/837 nt)	bglG	transcriptional antiterminator of the bgl operon
	?	NC_000913	= 3906234	54 (1.670)					coding (334/837 nt)	bglG	transcriptional antiterminator of the bgl operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAAGA  >  NC_000913/3906066‑3906361                                                                                                                                                    |                                                                                                                                                     cGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTAACAATAATGGTTAACGCTTCTCCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCCGGATATCCCACAGCAAc                                                                                                                                                     >  1:84579/1‑149 (MQ=255)                        tGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTCGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTg                                                                                                                              >  1:17966/1‑149 (MQ=255)                            tGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTg                                                                                                                           >  1:62813/1‑148 (MQ=255)                                      gCCCACTTCATCTTTCGGTAACTGCCCGCCCAACCTGTTATCAATAATGGTTAACGCTTCATCCCCTAGCTGGAGCTCTTTCGGGTACAGCCGCTGGATATCCCACAGCAACGGGTTTGGCAGCAACACGTTTTGCTGAAAGCGTTTaa                                                                                                                <  7:40945/149‑1 (MQ=255)                                        ccACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTg                                                                                                                                               <  4:6277/116‑1 (MQ=255)                                             tCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGgcag                                                                                                                                          <  1:153789/116‑1 (MQ=255)                                             tCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGgcag                                                                                                                                          >  2:153789/1‑116 (MQ=255)                                                 cTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGATGGATATCCCACAGCAACGGGATGGGCAGCAACACGATTTGCTGAAAGCGTTTAATCGCAAACTg                                                                                                      >  3:112963/1‑148 (MQ=255)                                                    tCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGc                                                                                                    <  2:62813/147‑1 (MQ=255)                                                      ggTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTCCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCCGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATg                                                                                                <  2:84579/149‑1 (MQ=255)                                                        tAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              <  1:794/133‑1 (MQ=255)                                                        tAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              >  2:794/1‑133 (MQ=255)                                                        tAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGt                                                                                              <  2:17966/149‑1 (MQ=255)                                                              cACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGt                                                                                          >  4:121816/1‑147 (MQ=255)                                                                 gCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTgg                                                                                                     >  7:446/1‑133 (MQ=255)                                                                 gCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTgg                                                                                                     <  8:446/133‑1 (MQ=255)                                                                 gCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGc                                                                                      >  6:100247/1‑148 (MQ=255)                                                                         gTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGAtata                                                                              >  1:147277/1‑148 (MQ=255)                                                                          tttATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              <  4:32899/115‑1 (MQ=255)                                                                          tttATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              >  3:32899/1‑115 (MQ=255)                                                                          tttATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATaaa                                                                            <  5:100247/149‑1 (MQ=255)                                                                            tATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCaa                                                                                                  <  4:40121/125‑1 (MQ=255)                                                                            tATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCaa                                                                                                  >  3:40121/1‑125 (MQ=255)                                                                             aTCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGc                                                                                                            >  2:105739/1‑114 (MQ=255)                                                                             aTCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGc                                                                                                            <  1:105739/114‑1 (MQ=255)                                                                                aataatGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAAt                                                                                                 <  4:103737/122‑1 (MQ=255)                                                                                aataatGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAAt                                                                                                 >  3:103737/1‑122 (MQ=255)                                                                                           aCGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGt                                                                                              >  8:126846/1‑114 (MQ=255)                                                                                           aCGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGt                                                                                              <  7:126846/114‑1 (MQ=255)                                                                                            cGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTc                                                          >  7:68890/1‑149 (MQ=255)                                                                                               ttcttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAg                                                                                           <  6:134445/113‑1 (MQ=255)                                                                                               ttcttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAg                                                                                           >  5:134445/1‑113 (MQ=255)                                                                                                 cttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAg                                                     >  5:106136/1‑149 (MQ=255)                                                                                                  ttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAgc                                                    <  2:147277/149‑1 (MQ=255)                                                                                                    actcTATCTGGAACTCTTTCGGGTAAAGCCTCTGGATATACCACAGCAATGGGTTGGGCAGCATCACGTTTTGCTGAAAGCGTTTAATAGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAg                                                     <  4:112963/143‑1 (MQ=255)                                                                                                      ccTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTa                                                                                        <  8:41237/109‑1 (MQ=255)                                                                                                      ccTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTa                                                                                        >  7:41237/1‑109 (MQ=255)                                                                                                              gAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCATGCGCt                                         >  2:30750/1‑148 (MQ=255)                                                                                                                aCTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTa                                        >  5:9009/1‑147 (MQ=255)                                                                                                                    tttCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTc                                                >  8:24120/1‑135 (MQ=255)                                                                                                                    tttCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTc                                                <  7:24120/135‑1 (MQ=255)                                                                                                                       cGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGata                                <  6:106136/148‑1 (MQ=255)                                                                                                                         ggTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAgcgc                                                  >  3:122709/1‑128 (MQ=255)                                                                                                                         ggTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAgcgc                                                  <  4:122709/128‑1 (MQ=255)                                                                                                                                 cGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATca                       >  5:92532/1‑147 (MQ=255)                                                                                                                                  gCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAg                    >  8:92567/1‑149 (MQ=255)                                                                                                                                      gATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTg                <  3:121816/149‑1 (MQ=255)                                                                                                                                            ccACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTaaa                                      >  6:67529/1‑121 (MQ=255)                                                                                                                                            ccACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTaaa                                      <  5:67529/121‑1 (MQ=255)                                                                                                                                              acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATg                                                                                                >  7:78438/1‑61 (MQ=255)                                                                                                                                              acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATg                                                                                                <  8:78438/61‑1 (MQ=255)                                                                                                                                              acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCa             >  6:144856/1‑144 (MQ=255)                                                                                                                                              acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCa             <  5:144856/144‑1 (MQ=255)                                                                                                                                               caGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCATAgg                   <  4:29259/137‑1 (MQ=255)                                                                                                                                               caGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCATAgg                   >  3:29259/1‑137 (MQ=255)                                                                                                                                                  cAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCaa    <  6:92532/149‑1 (MQ=255)                                                                                                                                                    aCGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATCCTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAaga  <  8:68890/149‑1 (MQ=255)                                                                                                                                                    aCGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCGTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAaga  <  1:30750/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAAGA  >  NC_000913/3906066‑3906361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.