BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4335653	111 (1.190)	2 (0.020)	4/236	NT	1.9%	intergenic (‑63/+41)	eptA/adiC	lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
*	?	NC_000913	= 4335655	110 (1.320)	2 (0.020)	4/236	NT	1.9%	intergenic (‑65/+39)	eptA/adiC	lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
Rejected: Frequency below/above cutoff threshold.

Only 100 of 139 total aligned reads displayed.

CAGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCA  >  NC_000913/4335507‑4335798

cAGGCAGATAGAGATATAAAAAGCGGCCTACAATAGCCAGGCGAGTAAATTCAATGAGGGTCTTGTTAGTAGGCGCTTCAACCTCCCGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCGTAAGtt                                                                                                                                                 >  1:79429/1‑149 (MQ=255)

 aGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGtt                                                                                                                                                 <  5:202597/148‑1 (MQ=255)

 aGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTc                                                                                                                                                <  5:9493‑M2/149‑2 (MQ=255)

 aGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTc                                                                                                                                                >  4:63091‑M2/1‑148 (MQ=255)

   gCAGATAGAGATATAAAAAGCGGCCCACAATATCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACCTCACGGTGTTTCCATCGAACAAAG‑TGCTCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTctt                                                                                                                                              >  6:102346‑M2/1‑146 (MQ=255)

      gATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaag                                                                                                                                           <  3:379039‑M2/149‑7 (MQ=255)

      gATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaag                                                                                                                                           >  7:232476‑M2/1‑143 (MQ=255)

      gATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaag                                                                                                                                           <  5:163548‑M2/149‑7 (MQ=255)

       aTAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACGTCCCGGTGGTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaagg                                                                                                                                          <  3:231343‑M2/149‑8 (MQ=255)

        tAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGAActtaagg                                                                                                                                          >  8:261299‑M2/1‑141 (MQ=255)

         agagATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGCGGATTCAACTTCAGGGTTTTTCCAGCG‑ACAAAGTTGCGAATATGTTC‑CAAAGCAAAATTAAAGCCAACATTATGTAGTTAAGttt                                                                                                                                        >  5:198331/1‑149 (MQ=255)

          gagaTATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttg                                                                                                                                       >  1:345538‑M2/1‑139 (MQ=255)

           agaTATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttgg                                                                                                                                      <  6:266958‑M2/149‑12 (MQ=255)

             atatAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCTAAGAGGGTCTTTTTAGTAGTCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggc                                                                                                                                     >  8:409293‑M2/1‑136 (MQ=255)

             atatAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggct                                                                                                                                    <  5:254772‑M2/149‑14 (MQ=255)

                taAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCtttt                                                                                                                                 <  7:352598/149‑1 (MQ=255)

                      gCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaa                                                                                                                                            <  2:348047‑M2/132‑6 (MQ=255)

                      gCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaa                                                                                                                                            >  1:348047‑M2/1‑127 (MQ=255)

                         gCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCt                                                                                                                        >  5:397890/1‑149 (MQ=255)

                          ccAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTg                                                                                                                       <  6:341083/149‑1 (MQ=255)

                            aacaaTAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGTTGTTTCCATCGAACAAAG‑TGCGCATATGCTCTCAAAGAAAAATT‑AAGCCAAACTTATGTTATTAAGGTTGGATTTTATTTTTGCTGGa                                                                                                                     >  6:356088/1‑149 (MQ=255)

                               aaTAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttgg                                                                                                                                      <  1:93480‑M2/129‑12 (MQ=255)

                               aaTAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttgg                                                                                                                                      >  2:93480‑M2/1‑118 (MQ=255)

                                 tAGCCAGGCGAGTAAATTCAAAGAGGGGCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGACCAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAg                                                                                                                <  6:162085/149‑1 (MQ=255)

                                  aGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAgg                                                                                                               >  6:184021/1‑149 (MQ=255)

                                    ccAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGAtt                                                                                                                   >  7:415512/1‑143 (MQ=255)

                                    ccAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGAtt                                                                                                                   <  8:415512/143‑1 (MQ=255)

                                     cAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGa                                                                                                            <  8:406323/149‑1 (MQ=255)

                                      aGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGaa                                                                                                           >  7:95802/1‑149 (MQ=255)

                                               aaTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCttt                                                                                                  <  6:53176/149‑1 (MQ=255)

                                               aaTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCttt                                                                                                  >  3:169289/1‑149 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTaa                                                                                                                 >  7:341466/1‑133 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTaa                                                                                                                 <  8:341466/133‑1 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTg                                                                                                 >  6:411410/1‑149 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCACCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTg                                                                                                 <  1:80390/149‑1 (MQ=255)

                                                 ttCAAAGAGCGTCATTTTAGGATGCGGATCAACTTGTCGGTGTTTCCATAGAACATAG‑TGCTCATATGCTCGCAAAGCAAAATT‑AAGCGAACCTTAATTTGTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGc                                                                                                <  8:374403/149‑1 (MQ=255)

                                                    aaaGCGGGGCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTg                                                                                                                       <  6:281607/123‑1 (MQ=255)

                                                    aaaGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCtt                                                                                              <  8:222353/148‑1 (MQ=255)

                                                    aaaGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTa                                                                                             >  6:148654/1‑149 (MQ=255)

                                                    aaaGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTa                                                                                             >  1:260208/1‑149 (MQ=255)

                                                           gTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTg                                                                                       >  2:174446/1‑148 (MQ=255)

                                                           gTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGc                                                                                      <  1:429059/149‑1 (MQ=255)

                                                            tCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCa                                                                                     >  3:91259/1‑149 (MQ=255)

                                                            tCTTTTTAGTAGCCGCTTCAACATCACGGTGATTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTAATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGCTGCa                                                                                     >  4:203502/1‑149 (MQ=255)

                                                              tttttAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATc                                                                                   >  8:410867/1‑149 (MQ=255)

                                                                tttAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCt                                                                                  >  5:397913/1‑148 (MQ=255)

                                                                   agtagGCGC‑TCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAgg                                                                              <  2:231545/148‑1 (MQ=255)

                                                                    gtagGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAgg                                                                              <  5:266958/148‑1 (MQ=255)

                                                                    gtagGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAgg                                                                              >  8:112210/1‑148 (MQ=255)

                                                                     tagGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGa                                                                            <  7:112210/149‑1 (MQ=255)

                                                                      agGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGa                                                                            >  3:223366/1‑148 (MQ=255)

                                                                       ggCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGAt                                                                           <  4:31992/148‑1 (MQ=255)

                                                                          gcTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggc                                                                                                                                     <  4:218481‑M2/87‑13 (MQ=255)

                                                                          gcTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggc                                                                                                                                     >  3:218481‑M2/1‑75 (MQ=255)

                                                                            ttCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGt                                                                     >  7:225736/1‑149 (MQ=255)

                                                                            ttCAACATCACGGTGTTTCCATCGAAAAAAG‑TGAGCATATGCTCGCAAAGCAAAATT‑AACCCAAACTTAAGTTCTTAAGGTAGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCATTGCTTATTGGTGCATCTAAGGGATACGGGt                                                                     >  1:109782/1‑149 (MQ=255)

                                                                              cAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGttt                                                                   >  4:233994/1‑149 (MQ=255)

                                                                              cAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGttt                                                                   >  1:236340/1‑149 (MQ=255)

                                                                              cAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGtt                                                                    <  6:397890/148‑1 (MQ=255)

                                                                               aaCATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGtttt                                                                  <  1:156351/149‑1 (MQ=255)

                                                                               aaCATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGtttt                                                                  >  5:280962/1‑149 (MQ=255)

                                                                                acctCACGGGGGTTCCATCGCACAAAC‑GGCGCATATGCTCGCAAATCAAAATT‑TACGCCACCTTAAGGTCTTAACGTTGGGTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGttttt                                                                 <  2:207214/146‑1 (MQ=255)

                                                                                aCATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGttttt                                                                 <  8:208615/149‑1 (MQ=255)

                                                                                 cATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTa                                                                <  4:169289/149‑1 (MQ=255)

                                                                                  aTCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCTCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTAt                                                               <  1:212260/149‑1 (MQ=255)

                                                                                    cACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATg                                                              >  8:231932/1‑148 (MQ=255)

                                                                                     aCGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGt                                                             <  4:91259/148‑1 (MQ=255)

                                                                                      cGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAg                                                           <  6:9493/149‑1 (MQ=255)

                                                                                       ggTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGc                                                          <  8:8877/149‑1 (MQ=255)

                                                                                          gtTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCgg                                                       <  4:379039/149‑1 (MQ=255)

                                                                                               cATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGt                                                   >  5:146867/1‑148 (MQ=255)

                                                                                                aTCGAACAAAG‑TGCGTATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAg                                                           >  8:182754/1‑139 (MQ=255)

                                                                                                aTCGAACAAAG‑TGCGTATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAg                                                           <  7:182754/139‑1 (MQ=255)

                                                                                                 tCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGt                                                                                        >  4:392475/1‑109 (MQ=255)

                                                                                                 tCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGt                                                                                        <  3:392475/109‑1 (MQ=255)

                                                                                                    aaCAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCa                                             <  6:163548/149‑1 (MQ=255)

                                                                                                    aaCAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGAActtaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgcctactaaaaagaccctcttt                                                  >  3:264114‑M2/1‑49 (MQ=255)

                                                                                                    aaCAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGAActtaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgcctactaaaaagaccctcttt                                                  <  4:264114‑M2/144‑96 (MQ=255)

                                                                                                      cAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAgc                                           >  2:430141/1‑149 (MQ=255)

                                                                                                      cAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAgc                                           <  7:231932/149‑1 (MQ=255)

                                                                                                        aaG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGAGTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAgcg                                          >  3:159227/1‑148 (MQ=255)

                                                                                                            tGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATa                                      <  5:172926/149‑1 (MQ=255)

                                                                                                               gcATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGtt                                                     >  5:90327/1‑131 (MQ=255)

                                                                                                                 atatGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATgg                                 <  6:198331/149‑1 (MQ=255)

                                                                                                                   atGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCg                               >  4:357588/1‑149 (MQ=255)

                                                                                                                       tCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGtga                           >  4:100964/1‑149 (MQ=255)

                                                                                                                       tCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGtga                           >  4:30093/1‑149 (MQ=255)

                                                                                                                       tCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAAACTTTGCTTATTGGTGAATCTAAGGGATACGGTTTTTTATGTATCCGGTTGTAATTCAGCGCATACATGGAGGtga                           >  4:254838/1‑149 (MQ=255)

                                                                                                                         gcaaagcaaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGAATCTAAGGGATACGGGTTTTTATGTAGCCGGTGGTAATTCAGCGCCTACATGGCGGtgat                          <  3:254838/148‑1 (MQ=255)

                                                                                                                          caaagcaaaATT‑AAGCCAACCTTAAGTTCTTCAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGtgatga                        <  3:362774/149‑1 (MQ=255)

                                                                                                                           aaagcaaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGAc                       >  2:296210/1‑149 (MQ=255)

                                                                                                                              gcaaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCAt                    <  3:357588/149‑1 (MQ=255)

                                                                                                                               caaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCAt                    >  4:314161/1‑148 (MQ=255)

                                                                                                                                   ataaaaGCCAACCTTAAGAACTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAgg                >  3:265728/5‑149 (MQ=255)

                                                                                                                                       aaGCCAACCTTAAGAACTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGa            >  1:66978/1‑149 (MQ=255)

                                                                                                                                        aGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGa            >  3:321943/1‑148 (MQ=255)

                                                                                                                                          ccAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAgg                                                                              <  4:297931/80‑1 (MQ=255)

                                                                                                                                               cTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCa                                        >  2:79768/1‑113 (MQ=255)

                                                                                                                                               cTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTAGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGAc    >  5:362704/1‑149 (MQ=255)

                                                                                                                                                 tAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACca  >  1:248056/1‑149 (MQ=255)

CAGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCA  >  NC_000913/4335507‑4335798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.